Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3409 ATGGAGCAAAGGGCTGTTGTGGCTTCAATACTCAGTGCAAGTTTGGTGGTTGTTGCATTAGCTCTTAACCAAGGAGTGCAAGGAATTGGAATCGGTGTTAATTATGGCACAGTGGCAAACAACCTTCCTCCACCTGCAGAGGTTGCAAAATTTCTATCACAATCCACCACAATCAACAGGGTGAGACTCTTCGATGCGAACCCGGAAATTTTACACGCCTTTGGCGACACAGGGATAGAGGTGACCATAACCGTCCCCAACGATCAAATCCCCCACATCACTAACTTAACCTTTGCCCAACAATGGGTCAAAACCAATGTCCAACCTTTCATCCCCGCGACCAAGCTAATCAGAATTCTTGTGGGCAACGAAGTGCTGTCCACTGCCAACAAGCTTCTGATCAGCAACCTCGTACCCGCCATGCAAACCCTTCAGACGGCCCTCGTGGCAGCATCGTTAGACAACCGCATTAAAGTATCCACACCACACTCTTTGGGCATTTTGTCAAACTCAAGTCCACCCTCCGGCGCCAAGTTTAGGCAAGGCTATGACACGCACGTGCTTAAACCAATGCTTAACTTTCTCAAAGATGCCAACGCACCCTTCATGGTTAACCCATACCCTTTTTTCGGATGCTCTGCCAGCACCCTTGATTATGCAGTTTTCAGGTCCAATTCTGGTGTCTTTGATGATAACACTATGCTCCGATACACGAATATGTTGGATGCGCAACTTGACGCTGTTTATTCGGCGATGAAAGTTTTGGGCTTTGAGGACGTTCAGATTGTTATTGCCGAAACGGGCTGGCCTTCGGCCTGTGATCCGGCCCAAGTTGGGGTCGACCCGAAGACTGCTTCTGAGTACAATGGAAATCTCATACGCCATGTTACTTCTGGGGCCGGGACACCTCTCATGCCAAACAGGACTTTTGATACCTATATTTTTGCTTTGTTTGACGAAAATTTAAAGCCTGGTCCAACATGTGAGAGGAACTTTGGGCTCTTCAGGCCCAATATGACTCCTGTCTATGACATCCCAATAATGAGGAACAGCGTAGCTGTCATTGCTAACAGTGATTGTAAGGCATTTTTGTCAATCATAGTTGTCTTAAGCTTGATTTGTGCATGGGTTTAA 1134 0.4709 MEQRAVVASILSASLVVVALALNQGVQGIGIGVNYGTVANNLPPPAEVAKFLSQSTTINRVRLFDANPEILHAFGDTGIEVTITVPNDQIPHITNLTFAQQWVKTNVQPFIPATKLIRILVGNEVLSTANKLLISNLVPAMQTLQTALVAASLDNRIKVSTPHSLGILSNSSPPSGAKFRQGYDTHVLKPMLNFLKDANAPFMVNPYPFFGCSASTLDYAVFRSNSGVFDDNTMLRYTNMLDAQLDAVYSAMKVLGFEDVQIVIAETGWPSACDPAQVGVDPKTASEYNGNLIRHVTSGAGTPLMPNRTFDTYIFALFDENLKPGPTCERNFGLFRPNMTPVYDIPIMRNSVAVIANSDCKAFLSIIVVLSLICAWV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3409 377 Pfam Glycosyl hydrolases family 17 31 345 IPR000490 GO:0004553|GO:0005975
Ssu1g3409 377 Gene3D Glycosidases 30 353 - -
Ssu1g3409 377 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 19 353 - -
Ssu1g3409 377 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 353 IPR044965 GO:0004553|GO:0005975
Ssu1g3409 377 SUPERFAMILY (Trans)glycosidases 31 345 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3409 Ssu-Chr1 87709493 87710869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3409 31 349 Miscellaneous Gene Families AT3G46570 57.143 1.46e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3409 - - ccaj:109788601 655.981