Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3404 ATGTCCAACAATCTGGTTTCAGAGCTGATACCGAGCATGCAGATGGCTCAGTTGGAGCCCCTTATGAACAAGGTTGATTCGTCAGGGAGACAGATGGAAATGGGGCTCTTGGGTCCTGTATCCAGTGATATTGTGTCGCAGCCGCGTGCAACTCTGAATGAAAGTGTTGGATTATTGAGAGCTGTGCCTGGTGAACCTAGGTCTCAGGGCTTACCCCTTTCGAGCATGCAGAGTGGGCGGGTAGAAGCACAAGCAAGTAATCTGGGAATGCATCCGAATAGCACGGGGCCTCAGCAGCAGCCAACAACTCCCAAGCGCAAGGCACCGATGGAACTGTTGTCCGGTAGCTCCATGACATTTAACAAGCGGGTTGCACAAATGGGAAATAGACCTTGGTTGCAGCAAGGACCTAATGCATCAAATAAAGGTTCTCCGCAGATGCAATCCCCGTCAAATGCCTCCAGGACACAGCATTCGGCAGCTTCTAGTAGGAGAAAAACACAGTTGGATAACACTTCCAGTAAACCTGGGACACCTCGGTCCTTGAATTCTAAAAGTCAGAATACGCAGATGAAACAATCCTCCAAGGTTCAAACTGAATCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCTTTAGCTGCTGCTTTATCCTTGGTTTCTCAGCAAGGTAAACCTCAGCTCCCAAACAATAATACACTGAATGATGCTACCAATACTCAGGGTAAATTAGAGAGCAGCTCTCAATGTGCTGGATCAGCACCTGCATCCATCGATAATTCACTGGAGCGAAGGCAGGACATTTCTCAGTCAGTTAATTCCTCTTTTGCCGAGGCTGATTCAGTTGGCCATGTGGTGGGAGATCACAGGCAGAGTACAACATTTAATGAAGATTTTCCGGAAAAATACAAGGACTATGAAGCAGGATCCACAAATGCATCAAACAATGAAAACATACTGAGCTCTATGCAAGTCTTGAACTGTGATAAGCAACATTTCCAGTCAAGTTACACTTTGACTACTGATGATGTTCCTTTCAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTAGTATCTGATATGATGGACGTGGGAAATCAAAGGGAAAGTCAAACTAATATAGAGCAGAGATCAGAACCTGAGGAAACGGGAGGAAGTTGTAGGGAGGAGGTCCCTATGCCTGAACTTGTAGCTTCAAGAATAGAAGCAGAACTCTTCAAGCTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGtctcttttattcaatttaaaagatCGCAATAATCCTGAACTTAGAGAAAGGGTTATGTTTGGTGAAATTCCTCCAGAACAATTATGTTCAATGACTGCAGAGGAACTTGCTTCAAAGGAGCTCTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCACAAATGGTGGTTTTACCTGATTCAGATGTTGATATTAGACGTTTGGTCAAGAAGACACATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTCTCAGTGGAGGAGGTTTCAGGTGGCACAACCTCGGTTGCTCGAAgccaaacaataaaaaaggatGTGGAAGGCTCTTCTCCTTCCAAAGTTGATGTGAACACTGATGCTGAGAAGGTCAATTTACAGAAGGATAATACATTTTCCATTACCATTTCTTCCAATGATGGGACTGATCCCATGCAAGGGCTTATGACAGATGATGCATTGAAGGACCCTGACTTTCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCATTTGAAAATTTACCAGTAGAATCTGGGAAAATGATACCTACCTTAGACAAGGATGATTCTGGGGTTGGATCTAAATCGAAATCTTCTGATTTAACTTCACATGAGCAAGCTGATGTCACTCCTGATAAGTCTGAGAAGTTTCAAAGCACATGTGTAAATTCAGATGCTGAAGAGGAGAAAAAGTTTAATGCTGAATCTGGGGCCATTTCTTCTGATACGAGATACACTGTGAGTCATGCTGACATGAAGTCAACTGATGACGTGAAGTCTGCTTCCAGTGATGCTGAGTTGAGAGACAATCAGTTACATGCGGAAGAgagatatgataataataataggtatGCGAAGGCTGCAGTCCCTACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCAAATATCTCTACCACTCATTCAGTCATAAGCATCTTTAAGAGTGGTGATAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTTGATGCATTTGAGAAATTTCTGCAAGAGCTTCGACTGTCCAGAAGTCGTGCAATCATGGTTTCACATTTCGTTTCCAAAGAGTCGGACGAGCAATCAACTCTCCTTGAGGTGGCTGACTCGTACATTTCGGACGAGAGAGTAGGATTTGCTGAGCCTGTGCATGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGgagaaaaactaatttaacttcGTCTATATCACCCACCACTTCATCACATCACAAACATAGCTCTAAAAGACAAAACTTGAGTAGGAGACAGCAAGAAATAAATGTGAATGCCAATTCCACCCACAAAGCAGTGCCCTCTACGGGCTTTAAGACCACCgagaatgatgatgatgatgatgatgatgttccTCCGGGATTTGGGCCACCAGTGGCCCGAGTTGTGGATGACCTCCCGGAGTTTAATTTCTCCGGCAGTTCAAATCCGTCACACTTGATCCCAAAACCAATGGGTCCACCAGGCATGGTCCCATTACGCTCGGTTAACCAAGCCCCAGCACGCCCTGTAGAACAAATGAGGGAACTTGTACACAAATATGGGCAAAACAAACTGACTGCACCTTCAGGAAAGTGGCAGGATAAATTTGGGGGGACAATTCAACCCTGGAATGATGACGACGATGACATACCTGAATGGCAGCCCCAAACTTCCCAGAATCAGTTTCCTCCCCAACAGACAATGCACAACTTTCATCTTCGACCTCACATTTTGAATCAATCATTTCCGGGTTCACCACAACAGCCAATTATGACAACACAATTTCTGCAACCCCCTATGAATGTGACACATGGCCAACGAAATTTTGACCCTCAGAGGGTTCCTTCTGCCCAGGGTAGCAACCTACAGCCAAGAGGTGGACCGCCCTATGGAGCGCCTGCGCAAGGCACTACCTGGCCGCAACATGTGTCTAGGAGTAGGGGATATTAG 3384 0.4356 MSNNLVSELIPSMQMAQLEPLMNKVDSSGRQMEMGLLGPVSSDIVSQPRATLNESVGLLRAVPGEPRSQGLPLSSMQSGRVEAQASNLGMHPNSTGPQQQPTTPKRKAPMELLSGSSMTFNKRVAQMGNRPWLQQGPNASNKGSPQMQSPSNASRTQHSAASSRRKTQLDNTSSKPGTPRSLNSKSQNTQMKQSSKVQTESSESVRSKMRESLAAALSLVSQQGKPQLPNNNTLNDATNTQGKLESSSQCAGSAPASIDNSLERRQDISQSVNSSFAEADSVGHVVGDHRQSTTFNEDFPEKYKDYEAGSTNASNNENILSSMQVLNCDKQHFQSSYTLTTDDVPFSDSFFMKDDLLQGNGLSWVVSDMMDVGNQRESQTNIEQRSEPEETGGSCREEVPMPELVASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGEIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDIRRLVKKTHKGEFQVEVEHEDNVSVEEVSGGTTSVARSQTIKKDVEGSSPSKVDVNTDAEKVNLQKDNTFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESGKMIPTLDKDDSGVGSKSKSSDLTSHEQADVTPDKSEKFQSTCVNSDAEEEKKFNAESGAISSDTRYTVSHADMKSTDDVKSASSDAELRDNQLHAEERYDNNNRYAKAAVPTKGECLWEGMLQPNISTTHSVISIFKSGDKTAAKDWPGFLEIKGRVRLDAFEKFLQELRLSRSRAIMVSHFVSKESDEQSTLLEVADSYISDERVGFAEPVHGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSSISPTTSSHHKHSSKRQNLSRRQQEINVNANSTHKAVPSTGFKTTENDDDDDDDVPPGFGPPVARVVDDLPEFNFSGSSNPSHLIPKPMGPPGMVPLRSVNQAPARPVEQMRELVHKYGQNKLTAPSGKWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFPPQQTMHNFHLRPHILNQSFPGSPQQPIMTTQFLQPPMNVTHGQRNFDPQRVPSAQGSNLQPRGGPPYGAPAQGTTWPQHVSRSRGY 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3404 1127 ProSiteProfiles TFIIS central domain profile. 371 493 IPR003618 GO:0006351
Ssu1g3404 1127 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 30 1096 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 60 108 - -
Ssu1g3404 1127 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 30 1096 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 1079 1101 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 521 551 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 682 705 - -
Ssu1g3404 1127 Gene3D - 377 468 IPR036575 GO:0006351
Ssu1g3404 1127 SUPERFAMILY Elongation factor TFIIS domain 2 401 469 IPR036575 GO:0006351
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 607 657 - -
Ssu1g3404 1127 SMART mid_6 373 476 IPR003618 GO:0006351
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 70 105 - -
Ssu1g3404 1127 Pfam SPOC domain 731 873 IPR012921 -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 1079 1127 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 566 585 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 131 202 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 222 257 - -
Ssu1g3404 1127 Pfam Transcription factor S-II (TFIIS), central domain 390 481 IPR003618 GO:0006351
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 688 705 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 375 396 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 131 210 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 900 923 - -
Ssu1g3404 1127 MobiDBLite consensus disorder prediction 881 939 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3404 Ssu-Chr1 87644858 87651120 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3404 - - gmx:100808809 1845.09