LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3394	ATGGTGGCATTGCTAGTGGGCATTGTTGCAGAAATCCACCTCACACTCTCTCTCACTCGCTGCGACTTCTACCTCTTGTTAATCCCAAAACCGTGCATCCCCTTCGCTGAGGCGAATGCGACCAAGATGCCGAGAATGGAGGACATTCTGAGCCTTCCGGTGCAAGACCCTCTTTCTCCCGAGTTTTCTGCTGCTCACATAAATTGGGTTAAATTGGAAGGCGGTCGCCAAGGTGGTGATGATATTGCTCTCATTCCTTTTGCCAGagttgatgattttgtgaaagGGGAATCTTCCAACCCTGAATGCCCTGCGAGTTTCCGCATAGAATCTAGAAGGAAGAGACCTGTAGGAAGCATTGCCAAACCAAGGGTTGATGGTTATCTTGAATATACACTATACTGGTGTTCTTATGGTCCTGAAGACTACCGAGAGAGTGACTTGGGTGTAGGGGATGGCGCGAGCACCAAACCTGCTTCGGGGAAGGGGAGCAGGCCAGGGCGGCGTCATATGATGAGAGGGTGCCTTTGCCATTTCACTGTTAAAAGACTGTACACGCGACCCCTTCTTGCGCTAATCATATATAACCAAAGAAGGCATGTGGATAAATCAGGGGCACCGTGTCATGGGTTACTTGACAGGGATGCGGTAGGGACGAGAGCTATGTATGCTCCACGAATTTCAGATGAGTTACGCCAGAAAGTGATGTCTATGCTTTATGTTGGAATATCTTTGGACAAGATAATACAGCACCATGCAGAGGGGATGCAGAAGCAAGGTGGGCCCCAAAACCGTGATGATTTTCTCACTCGAAATGATGTGCGTAATATGGAAAGGACTATTCGTATTTCTTCACATGAGCTACATGGAAATGATGAATGCAGTGTAAAGATGTGGGTTCAGCGCCATCAGAAGCATGTTTTCTATTTCCAAGATAACTCAGGTTCAGAACCATTTGTGTTGGGTATACAGACAGATTGGCAGCTGCAACAAATGCTTCAATATGgaaataatagtttaatttcttttcattcaaGTTTTGGCTTGAAGAAGCTTAAGTATCCCGTATGCTCTTTACTTGTTTTCAATTCATCTCAAAATGCAATTCCGGTTGCCTGGATCATCACCTCGTCTTTTGTTGGTAAAGCTATTCATAAATGGATTGTATTGCTATCTGAAAGATTACGAACCAAGGATCCCAGATGGAGGCCTAATGCTATTTTGTTGGATGATCCATCTTTGGACTATTCTATCATAAGAGAGGCTTTCCAGTGTCGCATCCTATTATGTACCTGGCAAGTTCGCCGTACTTggattaaaaaacttttaaaaaagtgcTGCAACTTTGAGGTGCAACGGGAGATGTTTAGGCACTTGGGATGGATTCTGTACTGTACAAGATGTGGGTCAAATGCTATGGATGCAGTTGAAGAGCTTATGCAAATTTTTGTTGACCAGTGTGCCTTCATGGACTATTTCAAGAGCCATTGGCTAGCTAGTATAGATATGTGGATTAATGCTATAAAATCACTCCCTGTGGCAACTCCAGAGCCACATGCTGCGATAGAATCCTatcacctaaaattaaaatccatGCTTTTGAAGGAGAATTATGCTAATTTCTGGCTAAGAGTTGACTGGTTAATCCACACTTTAACTACTGAATTTCACTCATTATACTGGCTAGATCAATACAGTTTAGAGACTGGGTATTTTGAGAATCTACGGGACTATTCTTTCTCCTCTAATGCTTGGTATCATGCTCTTCATATTCCAGATGTTGATGTGGTACTGGATGAGCAAAATCTCCACCTTGCCAAAGTTTTATCCCAGACTGACAGAAGCTTGGTGTATACAGTTTGGAATCCTGGTTCAGAATTTTCACTTTGTGATTGTTCCTGGTCTAGGCTGGGAAACCTCTGTAAACATGTCATCAAGGTGGCAACTTTCTGTAGAAGTCGACAGGTTGCAAGACCATCGTTGTCTGCTCAAGTTTATAAACAGGCTTTGCTCACCCTTCTCCATAATCGTCCTGATGATCCTTTAGTTCTGGACCATACCATTCTACATGTAGCCCGTTTGCAACAAGACATTAAGGCCTTGGAAGACTTGTCCAACAGTGGATTGCTCCAGCCTATAGCTCCTGATTTAAGTTCTCAAATGGCTGAAAATCCTCTACTTTTTCAGCACATCCAGTGA	2199	0.4234	MVALLVGIVAEIHLTLSLTRCDFYLLLIPKPCIPFAEANATKMPRMEDILSLPVQDPLSPEFSAAHINWVKLEGGRQGGDDIALIPFARVDDFVKGESSNPECPASFRIESRRKRPVGSIAKPRVDGYLEYTLYWCSYGPEDYRESDLGVGDGASTKPASGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRRHVDKSGAPCHGLLDRDAVGTRAMYAPRISDELRQKVMSMLYVGISLDKIIQHHAEGMQKQGGPQNRDDFLTRNDVRNMERTIRISSHELHGNDECSVKMWVQRHQKHVFYFQDNSGSEPFVLGIQTDWQLQQMLQYGNNSLISFHSSFGLKKLKYPVCSLLVFNSSQNAIPVAWIITSSFVGKAIHKWIVLLSERLRTKDPRWRPNAILLDDPSLDYSIIREAFQCRILLCTWQVRRTWIKKLLKKCCNFEVQREMFRHLGWILYCTRCGSNAMDAVEELMQIFVDQCAFMDYFKSHWLASIDMWINAIKSLPVATPEPHAAIESYHLKLKSMLLKENYANFWLRVDWLIHTLTTEFHSLYWLDQYSLETGYFENLRDYSFSSNAWYHALHIPDVDVVLDEQNLHLAKVLSQTDRSLVYTVWNPGSEFSLCDCSWSRLGNLCKHVIKVATFCRSRQVARPSLSAQVYKQALLTLLHNRPDDPLVLDHTILHVARLQQDIKALEDLSNSGLLQPIAPDLSSQMAENPLLFQHIQ	732

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g3394	732	ProSiteProfiles	Zinc finger SWIM-type profile.	618	652	IPR007527	GO:0008270
	Ssu1g3394	732	MobiDBLite	consensus disorder prediction	149	168	-	-
	Ssu1g3394	732	PANTHER	ZINC ION-BINDING PROTEIN	40	730	-	-
	Ssu1g3394	732	PANTHER	ZINC ION BINDING PROTEIN	40	730	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3394	Ssu-Chr1	87460662	87466749	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3394	-		-	gmx:100779025	1365.13