Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3376 ATGGATGCCACGTGTCACACTTTCAACTGCTTGATTGCCCCTTCCCGCAGCAAAACCCAACCAACGTTATACATGGCCATTCTCCTCTGCAAGCCACTTCCACTTCTTTCTCTGAGAACCACCACCAATTCCTCCAAGTCCACGTTAAACTCAACACTGACAAACCCAAGAAGAAGAATTCGGTTGTTCCTAGCGATGAACACGTTGGCCAAATCCGAACCCGTGTCGTCCTCAGCCTCTTCATCAACGTACCAGGTGCCAGAGCAAGATGCCAACGACATGGACCGCGTGGCAAACCACACATTTCGAAGGTACACGTCCAACGCCAAGAGGAGTGGCAAAGGAACAGCCATTGTGTGGTTCAGGAACGATCTCAGAGTTTTGGATAATGAGGCTCTCTATAAGGCATGGGTTTCCTCCGAAACCGTGTTACCTGTCTATTGTGTTGATCCTCGACACTTTTCCACTACTTATCATTTCGGGTTTCCAAAAACCGGTGCATTGAGAGCGCAGTTTCTCCTTGAATGCTTGGCTGACTTGAGGAAGAATTTGATGAAGAAAGGACTTAATTTGCTTGTACAACCTGGGAAGCCAGAGGATATTCTTCCTTCTCTCGCAAAAGCTTTTGGAGCTCACACAGTGTATGCACAGAAAGAAACTTGCAGTGAGGAGCTGAATGTTGAAAGGTTAGTCATCAGAGGTCTTCAACAAGTTGTGATATCACCTGAGCAGTCCAGTGGTGTGACAGTTTCAAACAACATCCCTAAGTTGCAATTTGTTTGGGGTACTACCATGTACCACCTTGATGACCTCCCTTTTGATGCCATTAGTTTGCCAGATGTGTATACTCAATTTCGTAAGATTGTTGAAGCCAAATGTACCGTACGCACATGCATCAAACTACCAGCATCTCTTGGACCACCTCCCCTAATTGAGGATTGGGGGTGCCTTCCTTCATTAGAGCAGCTGGGACTTTGCTTACAGAATGTTAACAAAGGGATGAAGTTTGTGGGGGGTGAAACAGCAGCATTGAGCAGAGTATATGAATACTTTTGGAAGAAGGATTTGCTAAAGGTGTATAAAGAGACCAGGAATGGGATGTTAGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATACATGAAGAGGTGAAGAGATATGAGAACGAAAGACAAGCAAATAGTTCTACCTACTGgGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAGGTGGCCCTAGGAAAGTTCAGCGCAACTGGAGCCAAGACAAGAATTTGTTTGAATCCTGGAGAGATGGTTGTACGGGGTATCCTCTGATAGATGCCAACATGAAAGAACTATCAAGTACAGGGTTTATGTCAAATAGAGGACGGCAGATTGTGTGTTCCTTTCTTGTTCGTGACATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGAAATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAGTACGTTGCATACTGGTTGCCACAGTTGCGAAAAATCCCAAAGGAGAAAAGGAACTTTCCTggaaatttattatacattccTCAAATTGTACCTCTCAAGTTTGGAACAGCTAGTGGACACAATAAGGACAAGTCCCTTGGTGCAAGAAGAGCCAACGATAGAGGAAGTGAAAGAAGATGGAACAGAAGATGA 1842 0.4403 MDATCHTFNCLIAPSRSKTQPTLYMAILLCKPLPLLSLRTTTNSSKSTLNSTLTNPRRRIRLFLAMNTLAKSEPVSSSASSSTYQVPEQDANDMDRVANHTFRRYTSNAKRSGKGTAIVWFRNDLRVLDNEALYKAWVSSETVLPVYCVDPRHFSTTYHFGFPKTGALRAQFLLECLADLRKNLMKKGLNLLVQPGKPEDILPSLAKAFGAHTVYAQKETCSEELNVERLVIRGLQQVVISPEQSSGVTVSNNIPKLQFVWGTTMYHLDDLPFDAISLPDVYTQFRKIVEAKCTVRTCIKLPASLGPPPLIEDWGCLPSLEQLGLCLQNVNKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIHEEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVQRNWSQDKNLFESWRDGCTGYPLIDANMKELSSTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFEKCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIPKEKRNFPGNLLYIPQIVPLKFGTASGHNKDKSLGARRANDRGSERRWNRR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3376 613 MobiDBLite consensus disorder prediction 590 613 - -
Ssu1g3376 613 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 433 588 - -
Ssu1g3376 613 PRINTS DNA photolyase signature 459 475 IPR002081 -
Ssu1g3376 613 PRINTS DNA photolyase signature 518 532 IPR002081 -
Ssu1g3376 613 PRINTS DNA photolyase signature 479 497 IPR002081 -
Ssu1g3376 613 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 334 570 IPR036134 -
Ssu1g3376 613 Gene3D - 263 432 - -
Ssu1g3376 613 Gene3D HUPs 81 262 IPR014729 -
Ssu1g3376 613 TIGRFAM crypto_DASH: cryptochrome, DASH family 116 558 IPR014133 GO:0003913|GO:0006281
Ssu1g3376 613 Pfam DNA photolyase 117 297 IPR006050 -
Ssu1g3376 613 PANTHER CRYPTOCHROME DASH 107 591 - -
Ssu1g3376 613 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 115 250 IPR006050 -
Ssu1g3376 613 Pfam FAD binding domain of DNA photolyase 412 566 IPR005101 -
Ssu1g3376 613 MobiDBLite consensus disorder prediction 593 613 - -
Ssu1g3376 613 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 114 313 IPR036155 -
Ssu1g3376 613 PANTHER CRYPTOCHROME 107 591 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3376 Ssu-Chr1 87152072 87158705 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3376 K25656 - gmx:100783312 1054.66