Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3373 atGGGTTCTAGAAAGTCTTCTCTTGTGCGCTTGGCTCTTGTGTTGGCCTTCTGTTCCACCATTCACGCGTTGGACATCACAAAACTATTGGGCCAACACCCCGAATACGCGCGGTTCAACAAATACCTAACCGAAACCAAGCTGGCGGATCAAATCAACAGCCGCAAGGCCGTTACGGTCCTTGCCCTGGACGACGCCGCCATGGCCTCTCTCTCCGGCGAGTCCGCGGAGGCCGTCAAGGCGATCCTGAGCACGCACGTTCTGGTCGACTTCTACGACGAGAAGAAGCTGATGGAGGCCCAAGGGAGCCGCAGCCAGGTGGAGACCCTGTTCCAGTCCTCCGGCGCCGCCAAGAACAAGGAGGGCTACATCTACGTGGCGCTGATCAACGAGGGCGAGATCGCGTTCGGGTCCGCCGCGGCCGCGCCGGGCGCCCCTTTCGAGGTGGTGCTCGTGCGAACCGTGACGATGGAGCCCGGCGCCGTTTCGGTTCTTCAGGTTAGCAAGCCCATCGTGGCCCCCGGCATCATTGGAGCATCGACCGCGAAGGCGCCGCTTGCGACGGCCAGTTACATTGCCCAGCCCCCTGTCGCTGCGGCGCCCGCTCCGAGCAGCGCTTCCCGCGTCTGCATGGGATTCGTTGGTGCATTCGCTTCCCTCTTGATGCTCGCTTTCTAA 678 0.6195 MGSRKSSLVRLALVLAFCSTIHALDITKLLGQHPEYARFNKYLTETKLADQINSRKAVTVLALDDAAMASLSGESAEAVKAILSTHVLVDFYDEKKLMEAQGSRSQVETLFQSSGAAKNKEGYIYVALINEGEIAFGSAAAAPGAPFEVVLVRTVTMEPGAVSVLQVSKPIVAPGIIGASTAKAPLATASYIAQPPVAAAPAPSSASRVCMGFVGAFASLLMLAF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3373 225 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 201 IPR033254 -
Ssu1g3373 225 SUPERFAMILY FAS1 domain 30 116 IPR036378 -
Ssu1g3373 225 Pfam Fasciclin domain 35 110 IPR000782 -
Ssu1g3373 225 ProSiteProfiles FAS1/BIgH3 domain profile. 23 153 IPR000782 -
Ssu1g3373 225 Gene3D FAS1 domain 23 166 IPR036378 -
Ssu1g3373 225 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3373 Ssu-Chr1 87103363 87104040 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3373 - - gmx:100797630 286.574