Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3368 ATGCAACAAGGGAAAGAAATGGAAGGGTTGTCGTCTTCATCGGCGATCGCGCAGAAAACATGGGAGCTGGAGAACAACATCATCCCGATGGACACTCCGGGCGGCGGCGCCACGACGAACGCCGACGACTCGATCTTCTACTACGACGAGGCCGGGCAGAACGAGTTCCAGCGCGACAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTCCTCAAGATGGTCGTGCACGCGCGCTCCGGCGGCACCATCGAGGTCATGGGCCTCATGCAGGGCAAAACCGACGCCGACGCCATCATCGTCATGGATGCCTTCGCCCTCCCCGTTGAAGGCACCGAAACGCGCGTCAACGCCCAAGCCGACGCCTACGAATACATGGTCGATTATTCCCAGACAAACAAACAGGCTGGGCGTTTGGAGAATGTTGTGGGATGGTATCACTCTCATCCTGGGTATGGGTGCTGGCTTTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCCGTTGTGATTGACCCAACGAGGACTGTTTCGGCGGGGAAGGTTGAGATTGGGGCTTTCAGGACTTACCCTGAAGGGTATAAGCCTCCGGATGAGCCTATTTCTGAGTATCAGACTATTCCTCTTAATAAGATTGAGGATTTTGGTGTTCACTGTAAACagTATTATGCCTTGGATATCACTTACTTTAAGTCCTCGCTTGATTCACACCTCTTGGATCTGCTGTGGAACAAGTATTGGGTGAATACGCTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAGAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCGCGCTTTGGGCCACTAATAGCACCCGCGCCTAGGAAGAAAGAGGAAGAATCTCCACTTGCTAAGATTACTCGTGACAGTGCAAAAATAACTGTAGAGCAAGTGCATGGTCTAATGTCACAGGTCATCAAGGACATTCTGTTTAACTCCGTTCATCAAGCCAACAGAACTCGCACAGAAGCATCTGGTCCTGAACCAATGATTGAAAGCTGA 1110 0.518 MQQGKEMEGLSSSSAIAQKTWELENNIIPMDTPGGGATTNADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPAPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRTRTEASGPEPMIES 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3368 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 35 361 - -
Ssu1g3368 369 SUPERFAMILY JAB1/MPN domain 71 208 - -
Ssu1g3368 369 PANTHER BNAC07G13420D PROTEIN 35 361 IPR037740 GO:0004222|GO:0008180
Ssu1g3368 369 CDD MPN_RPN11_CSN5 61 333 - -
Ssu1g3368 369 Pfam Cop9 signalosome subunit 5 C-terminal domain 268 348 IPR040961 -
Ssu1g3368 369 Gene3D Cytidine Deaminase, domain 2 10 274 - -
Ssu1g3368 369 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 69 180 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu1g3368 369 SMART pad1_6 71 208 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu1g3368 369 ProSiteProfiles MPN domain profile. 72 209 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3368 Ssu-Chr1 86937891 86943187 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3368 K09613 - gmx:100817371 729.554