Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3354 ATGGCTCCGAGGTTGGACTTTTCCAATTGGTGGACCAAGGATACACAGAAGGGAACACCAGTGGTGGTGAAAATGGAGAACCCCACTTTCTCTGTTGTGGAGATCAATGGTGCAGATGCTGCATTCAGGCCAGTGGAGAAAAGCCGCGGCAAGAATGCCAAGCAAGTCACGTGGGTGTTGCTTCTCAGGGCTCACCGTGCTGTTGGCTGTGTCACTTGGCTTGCCACAGTGCTTTGGGCCTTGTTGGGAGCCATAAAGAAGAGGTTGATTCATGGACAAGGTGTGGCTGTGGAGTGTGAGAGTGACAAGTTGGAAAGAGGCAAGTTGCTGTTTAGAGTCATTAGAGTGTTCCTAGTGACTTCCTTGGCGGTTCTGGCCTTTGAGGTGGTTGCTTACCTTCAAGGTTGGCATTTTGGGAACCCCACTTTGCACATTCCTCGTACTTCTGATTTGGAAGGATTGCTCCACTTGGCTTATGTTGCTTGGTTGACGTTTCGTGCGGAGTACATTGCTCCTCCTATACAGGCGCTTTCCAAGTTTTGTGTTGTCTTGTTTCTTATCCAGTCTGTGGATCGCATGCTCCTTTGCTTGGGGTGCTTTTGGATCAAATACAGGAAGGTTAAGCCAAAGATTGATGGGGATACGTTCAAGAGTGATGATGTTGAAGGATCTGCAAGCAATTATCCCATGGTTCTGGTTCAAATTCCAATGTGCAATGAGAGGGAGGTATATGAGCAATCTATTTCTGCGGTTTGCCAAATTGATTGGCCAAGGGATCGTTTACTGATTCAAGTACTTGATGATTCTGATGATGAGAGCATACAGTGGTTAATTAAGACAGAGGTCTCTAAATGGAGCCAAAAGGGAATCAATATAATCTATAGGCATCGCTTACTCAGGACTGGATATAAAGCTGGAAATCTTAAATCTGCAATGAGCTGTGACTATGTGAAAGACTATGAGTTTGTTGCAATTTTTGATGCAGACTTTCAACCAAATCCTGATTTTCTTAAGCAAACTGTGCCACATTTCAAGGACAATCCCGAACTAGGTTTGGTCCAAGCAAGATGGTCTTTTGTGAACAAGGACGAGAATTTGTTAACTCGTCTCCAAAACATTAATTTATGCTTCCATTTTGAAGTAGAACAGCAGGTCAATGGggtatttctcaatttttttggtttcaatgGAACTGCCGGTGTTTGGAGAATCAAGGCCCTAGAAGAGTCCGGGGGCTGGCTAGAGAGGACAACTGTAGAAGATATGGACATTGCTGTCCGAGCTCATCTCAATGGTTGGAAATTTATCTTCCTAAATGATGTAAAGGTACCCTGTGAAGTTCCTGAGTCATATGAAGCTTATAGGAAGCAGCAACACCGCTGGCATTCAGGTCCTATGCAACTTTTTAGGTTGTGTCTTCCAGCAATTGTGAGATCTAAGGTGTCTGCATGGAAGAAAGCAAACTTAATACTACTATTTTTTCTGTTGAGGAAACTGATCCTTCCCTTTTACTCCTTCACCTTATTTTGCATAATTCTACCTCTAACCATGTTTGTACCAGAGGCAGAGCTTCCTTTGTGGGTGATCTGCTATGTGCCTGTATTTATGTCACTCCTTAATATTCTTCCTGCTCCAAAATCCTTTCCTTTCATTGTTCCCTACCTCCTTTTCGAAAATACCATGTCCGTCACCAAATTCAATGCAATGGTATCTGGTCTCTTCCAATTGGGCAGCTCTTATGAATGGGTTGTCACAAAGAAAGCTGGCAGGTCATCAGAGTCTGATTTACTGGCTGCTGCAGAAAGGGAAGCCAAGTCAATAGAACAACAAAAGATTCATAGAGGAGCTTCTGACAGTGACCTTATTGAGTCACACCAATTTAAGGAACGCAAAGAAGCTGCTCCAGCAACTGTTAAGAAAGCTAATAAGATATATAAGAAAGAGCTGACTTTGGCATTCCTCCTTCTCACTGCTTCTGTTAGGAGTCTGTTATCTGCACAAGGAGTTCACTTCTACTTTCTACTTTTCCAAGGGGTGACCTTCCTCCTTGTGGGGCTTGATTTGATCGGAGAGCAGATGAGCTAG 2085 0.4336 MAPRLDFSNWWTKDTQKGTPVVVKMENPTFSVVEINGADAAFRPVEKSRGKNAKQVTWVLLLRAHRAVGCVTWLATVLWALLGAIKKRLIHGQGVAVECESDKLERGKLLFRVIRVFLVTSLAVLAFEVVAYLQGWHFGNPTLHIPRTSDLEGLLHLAYVAWLTFRAEYIAPPIQALSKFCVVLFLIQSVDRMLLCLGCFWIKYRKVKPKIDGDTFKSDDVEGSASNYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQWLIKTEVSKWSQKGINIIYRHRLLRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVPCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIVRSKVSAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVICYVPVFMSLLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRSSESDLLAAAEREAKSIEQQKIHRGASDSDLIESHQFKERKEAAPATVKKANKIYKKELTLAFLLLTASVRSLLSAQGVHFYFLLFQGVTFLLVGLDLIGEQMS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3354 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 448 IPR029044 -
Ssu1g3354 694 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 1 694 - -
Ssu1g3354 694 Coils Coil 590 610 - -
Ssu1g3354 694 Pfam Glycosyl transferase family group 2 323 529 IPR001173 -
Ssu1g3354 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 509 IPR029044 -
Ssu1g3354 694 PANTHER - 1 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3354 Ssu-Chr1 86602747 86605681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3354 1 694 Miscellaneous Gene Families AT4G31590 80.057 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3354 - - gmx:100790397 1332.01