Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3350 ATGGCAGGGTTAAATTTTGAAGCGACATATACTGACAGCCATGATATTCAGAAGATATTTGCAGATGAAGGTGTTGAGTTCCTTTTATCTTGTGAAGGGAAGGTACCCATGTCAGAATGCAATGGGAAAATCATCTGCCTGTTTTTCTCTGCAAACTGGTGCAGGCCTTGCAGAGCTTTCATTCCCCATCTTGTTGAACTTTATGAAACACTGAGAAAGAGGGGAATAAATCTAGAGATCATCTTCATCTCCTTTGACCGTGATGAGGATGGATTTAAAGAACACTTCAAGAGCATGCCATGGCTAGCCGTCCCATTTGATGTAAATTTGCATAGAAGACTGATTGACAGATACCGAGTTGATCGAATCCCATCGTTCGTTCCATTATGTTCAGATGGCATAACTGTTGAAGAAGATTTGATTGGATGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCACAAGGAAGAGGCATGAGGAATTGAAAGCCATAGATAGAAGGAAACGTGAGGAAGCAAACTTGGAAGAATTATTGGGACACGAAGGACGCAACTCTCTCATCACTGGAGATGATAGAAAGGTGCCCATATCTGAACTAGCTGGTAAAACCATAGGCCTGTATTTTTGTGCCTATTGGTCTCCTCCTTGCTGCGCCTTCACTGTTCAACTTACAGATGTATACAACAATCTCAAGGCTGCAAACGGCGACTGCTTTGAGATTGTTTTAATCTCAACAGATAGGGATCTTAAGGAATTCAATGTCAACAAAAGTAGTATGCCATGGCTTGCTGTCCCATATGAGGACAGGACAAGGCATGACCTTAGAAGAATCTTTGATATAAAGGGCATTCCTGCTTTGGTTCTCATTGGACCAGATGGCAAGGTAATTAGTGTGAATGGGAAGTTTATGGTCTCCTCATATGGTGCAGAAGCTTTCCCGTTTACTGAATTGCGGATAAAAGACCTGGAAGCAGCTCTGAGAAAGGAAGGAGAGGCTTTGCCTCAACAGGTTGAGGATCTCAAGCATGAACATGTACTGAAATTGGATATGGCCAAAGCATATGTGTGTGATTCCTGTAAAAAGCAAGGGAAGTTCTGGACATTCTCTTGTGATGTCTGTGACTATGACCTTCACCCAAGTTGTCTAGAAAAGGTCAACAAGGACTAA 1170 0.4222 MAGLNFEATYTDSHDIQKIFADEGVEFLLSCEGKVPMSECNGKIICLFFSANWCRPCRAFIPHLVELYETLRKRGINLEIIFISFDRDEDGFKEHFKSMPWLAVPFDVNLHRRLIDRYRVDRIPSFVPLCSDGITVEEDLIGCIEDYGADAFPFTRKRHEELKAIDRRKREEANLEELLGHEGRNSLITGDDRKVPISELAGKTIGLYFCAYWSPPCCAFTVQLTDVYNNLKAANGDCFEIVLISTDRDLKEFNVNKSSMPWLAVPYEDRTRHDLRRIFDIKGIPALVLIGPDGKVISVNGKFMVSSYGAEAFPFTELRIKDLEAALRKEGEALPQQVEDLKHEHVLKLDMAKAYVCDSCKKQGKFWTFSCDVCDYDLHPSCLEKVNKD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3350 389 Gene3D Glutaredoxin 179 317 - -
Ssu1g3350 389 CDD TryX_like_TryX_NRX 187 315 IPR045870 GO:0004791
Ssu1g3350 389 SUPERFAMILY Thioredoxin-like 35 145 IPR036249 -
Ssu1g3350 389 Pfam C1 domain 342 382 IPR004146 -
Ssu1g3350 389 Gene3D Glutaredoxin 22 158 - -
Ssu1g3350 389 PANTHER NUCLEOREDOXIN 3-RELATED 1 385 - -
Ssu1g3350 389 ProSiteProfiles Thioredoxin domain profile. 177 328 IPR013766 -
Ssu1g3350 389 PANTHER THIOREDOXIN 1 385 - -
Ssu1g3350 389 ProSiteProfiles Thioredoxin domain profile. 1 170 IPR013766 -
Ssu1g3350 389 Pfam Thioredoxin-like 42 131 IPR012336 -
Ssu1g3350 389 Pfam Thioredoxin-like 202 296 IPR012336 -
Ssu1g3350 389 SUPERFAMILY Cysteine-rich domain 334 384 IPR046349 -
Ssu1g3350 389 SUPERFAMILY Thioredoxin-like 187 298 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3350 Ssu-Chr1 86543881 86545401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3350 K17609 - gmx:100778160 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3350 1 86543881 86545401 Ssu1g3350 1 86543881 86545401 ECH