Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3349 ATGGCGCGAGTGTGTGTGTCTCTGACATTCCCGCGCGCGCTCCATTTCGCAATTCAGCGCCACTCTCACTCGTCGCTGGTTACCTTCCGCGTAAACTCCCTTTACTCTAAAACTTGTAGTTACCGGGGAAGGGAACGGTCGGTGACTGATAGTGTTATGGCTTTTCAATCCTCTTCTGCTAAACCTATGAGTTGGTGTGATGGCGTTCAGGAAGCACGGGTTCTCGTCGCACCCGATCCTGGTACAGATGGAAATGGTTTGGGACAGATGATATTGCTTCGGCATCCCAAATCTGGAAATGCAACACAATATCTGTTTGTAAATGGAATGCTTCAAGAACTTCAATGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGACTATATAAGTGAAGATGGTCGGCTGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAATTGGATGAAATCTTGTTTATTGATGGGTATCCAGGATATCTGCAGTTAATGTCTGTTGTGGAGAACTGTATGCAAGTAGTTTCTGAAGTCAAAGAAGTTGGATCCTCAAAATTCTTCAGACTTGATGACTCAAAGGTTCTACGTTGGCTGTGCTATAAGgtTTGTCAGCTAAAGCAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACatTGATTGATGCAGTCTCTATATTAGGAGAGTATTTGAAGGAAAAGCCTTGGTTGCAGCTTTTGTGTAACCATCTTAAGTTAACTATACTTGAGGTTATCGGAAAAGCACAAGTAAATGCTGAAGGAAGTAACTCAGGTTTATGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGCTACAACTGCAAGGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGAGATGTTTTCGAGGGCCTCCCGAAAGAAAAGCTAA 1014 0.4181 MARVCVSLTFPRALHFAIQRHSHSSLVTFRVNSLYSKTCSYRGRERSVTDSVMAFQSSSAKPMSWCDGVQEARVLVAPDPGTDGNGLGQMILLRHPKSGNATQYLFVNGMLQELQWFKNLYGSWFLGDYISEDGRLYLSTPIDPVFIMLPIFEEARMKKGDDLGRFRQLDEILFIDGYPGYLQLMSVVENCMQVVSEVKEVGSSKFFRLDDSKVLRWLCYKVCQLKQTLPKLDKNYAVQSEKDTLIDAVSILGEYLKEKPWLQLLCNHLKLTILEVIGKAQVNAEGSNSGLCNELQEQSNDKKATTARKGRQAKKVKLETESHNIKEMFSRASRKKS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3349 337 MobiDBLite consensus disorder prediction 296 319 - -
Ssu1g3349 337 Gene3D - 142 270 - -
Ssu1g3349 337 Pfam Ydr279p protein family (RNase H2 complex component) wHTH domain 146 233 IPR019024 -
Ssu1g3349 337 Gene3D - 71 141 - -
Ssu1g3349 337 Pfam Ydr279p protein triple barrel domain 90 143 IPR041195 -
Ssu1g3349 337 MobiDBLite consensus disorder prediction 301 319 - -
Ssu1g3349 337 PANTHER RIBONUCLEASE H2 SUBUNIT B 56 336 IPR040456 GO:0032299
Ssu1g3349 337 CDD RNase_H2-B 74 227 IPR040456 GO:0032299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3349 K10744 - gmx:100792495 600.897