Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3338 ATGGGTTCGACCCTAATGGCCACAACCTCTATTCTCCTATGCTCGGGCCTAGCAGCAATCGTAAGCAGCACCTACAGTGTGAAAAAGCCACTCGAGGACACGGTCTATGGGGCTCACGGGGAGTTCATAGTAGCACTCAAATATGTCACTCTTCTCACtattttcctcttctccttcttctgcCACTCATTGTCCATAAGGTTCATAAACCAAGTGAACATCCTAATCAACACCCCTCAGGACCCCATGTCCTTGGTGACCCCTCAATATGTAACTGAGATATTGGAGAAAGGCTTCATTCTGAACACCGTCGGAAACAGACTCTTCTATGCAGCACTTCCTCTAACGCTCTGGATATTTGGCCCCGTGTTGGTGTTTCTGTGCTCTCTCACTATGGTTCCAGTGCTTTACAATCTTGACTTTGTGGTTACTGCTGCTAAGGGAAAGATGGACATGAATGAGAATAGAGATTTTGTATGA 480 0.4417 MGSTLMATTSILLCSGLAAIVSSTYSVKKPLEDTVYGAHGEFIVALKYVTLLTIFLFSFFCHSLSIRFINQVNILINTPQDPMSLVTPQYVTEILEKGFILNTVGNRLFYAALPLTLWIFGPVLVFLCSLTMVPVLYNLDFVVTAAKGKMDMNENRDFV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3338 159 Pfam Protein of unknown function, DUF599 1 143 IPR006747 -
Ssu1g3338 159 PANTHER PLANT/F12B17-70 PROTEIN 1 159 - -
Ssu1g3338 159 PANTHER - 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3338 Ssu-Chr1 86427018 86427497 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3338 - - gmx:100527805 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3338 1 86427018 86427497 Ssu1g3338 1 86427018 86427497 ECH
Ssu1g3338 1 86427018 86427497 Ssu5g0689 5 16448563 16452124 PCT