Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3334 ATGGGTATAGCAGAAGCATGCTCCAGATTCCTTGGGGACTTTTTACAAGCATTCAAATTCTCTCCACCAAACTCACTGTCTCACCTTGATCACAATCATCATCCTACCTGCAAGCCCCAGAACATGCTCAAACTTGATGACAAGATGGTTAGTGCTCTTGTCACTGTTTTTGGCATGGAAACCAATGGAAGAATTAAGAAGGAAAATGCTAGGCAAGTGGTGGAGAAGCTTGGTTTGATGTATGGTTCTGAGGGGGACAAGCCCTCATCAGAATTTGAGCTAGCTGAGGGTGGCTTGCTGGATGAAGAAGTGCCTGTGGAAGAGGTTCTTGGTGAGTTGGAGGACATGTCAAAGCGCAGTGAGCTGTTGCATGAAGCCTTCAAAATCTTTGACGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTCATTGCTTGGGTTTGGACAAGGGTTGGGATATGAATGCTATTGAGAAGATGGTGGAGGTTGTAGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGATGATGGGGTAG 561 0.451 MGIAEACSRFLGDFLQAFKFSPPNSLSHLDHNHHPTCKPQNMLKLDDKMVSALVTVFGMETNGRIKKENARQVVEKLGLMYGSEGDKPSSEFELAEGGLLDEEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLHCLGLDKGWDMNAIEKMVEVVDLNFDGKVDFGEFELMMG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3334 186 Pfam EF-hand domain pair 122 185 IPR002048 GO:0005509
Ssu1g3334 186 CDD EFh 123 181 IPR002048 GO:0005509
Ssu1g3334 186 Gene3D - 27 186 - -
Ssu1g3334 186 PANTHER CALCIUM BINDING PROTEIN 111 185 - -
Ssu1g3334 186 SMART efh_1 122 150 IPR002048 GO:0005509
Ssu1g3334 186 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Ssu1g3334 186 ProSiteProfiles EF-hand calcium-binding domain profile. 156 186 IPR002048 GO:0005509
Ssu1g3334 186 PANTHER CALCIUM BINDING 111 185 - -
Ssu1g3334 186 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Ssu1g3334 186 SUPERFAMILY EF-hand 42 185 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3334 Ssu-Chr1 86376218 86376778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3334 123 185 EF-hand Containing Proteins AT4G20780 58.730 2.45e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3334 - - gmx:100527700 286.574