Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3330 ATGGGAGTAAGAGAATTAGAAAACCGTTTCGTCACCGCCTTGAGAAACTGCGCGAAAATTGCGGAACTGAAGAAGCTTCATGCCCACTTCGTGAAGCTGTCACTGTCACAGAGCAACTTTCTGGCCACGAAAATGTTGGATCTATGCGACAACTTGGGTCACGTGGATTACGCGACCTTGCTGTTCCAACAACTAGAAGACCCAAACGTGTTCTCTTACAACGCAATCATCAGAACCTACACCCATAATCACAAGCATTCTCTGGCAATTACTCTCTTCAACCAAATGCTGACACGTGCAACAAAATCAGCATTGCCGGACAAATTCACGTTCCCGTTTGTGATAAAATCGTGTGCGGGTCTTCTCTGTCATCGTCTCGGGCAGCAAGTTCATGCGCACGTGTGCAAATTTGGACCCAATTCGCATGCAATAACGGAGAACGCGCTGATTGATATGTACACGAAGTGTGGCGATTTGAGTGGTGCGTATCAAGTGTTTGAGGAAATGTCTGAGCGAGACGCGGTTTCTTGGAATGGTTTAATCTCGGGGCACGCGCGGTTGGGGCACATGAAGAGCGCGAGGGAGGTGTTTGATGAAATGCCTTGTAGGACGATTGTGTCTTGGACAACTATGGTTAATGGGTATGCTAGAGCAGGGTGTTATGTTGATGCGTTGGAGATTTTTTGCGAGATGCAAGTGGTGGGTATTGAGCCTGATGAGATTAGTGTTATATCTGTTCTGCCAGCTTGTGCACAGCTTGGGGCTCTAGAGGTTGGGAAGTGGGTTCATGTGTACTCGGACAAAAGTGGGTTTTTGAAGAAGACCGGTGTGTGTAATGCACTGGTTGAAATGTATGCTAAGTGTGGTTGCATTGACGAGGCTTGGCGCTTGTTTGATCAgatggttgagaaggatgtGGTTTCTTGGAGTACAATGATTGGGGGACTGGCTAATCATGGGAAAGGGCATGCGGCAATTCAAGTTTTTGAAGATATGCAGAAAGCCGGGATGACTCCTAATGGGGTAACGTTTGTTGGTGTTTTGACAGCTTGTGCTCATGCAGGGTTGTGGAATGAGGGGTTGAGATATTTTGATGTGATGAGGGTGGATTATCAGTTAGAGCCAGAGATTGAGCACTATGGTTGCCTGGTTGATCTTCTAGGACGTTCGGGACGGCTTGATCAGGCTCTTGACACGATACTGAAGATGCCAATGCAACCGGATTCAAGGATATGGAACTCTTTGTTGAGCTCTTGCAGGATTCATCGCAATCTTGAGATTGCTGTTGTTGCGATGGAACAGCTTTTAGAGCTTGAACCTGAAGAGTCTGGGAACTATGTCTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAAGGCGTATCGAATGTTAGGAAACTCATAAGAAGTAAGAGGATAAGGAAAACCCCAGGGTGTAGCTTGATTGAGGTTAACAATGTGGTTCAAGAATTTGTATCAGGGGACGATTCGAAGGCCTTTTCACAAGATGTCTTTTGGATCCTAGAAGGGCTGAGTTTACACCAAACTAGAACCAATGACTTCATGAAATTTATCGAAGAAGATGCGGGCTaa 1596 0.4561 MGVRELENRFVTALRNCAKIAELKKLHAHFVKLSLSQSNFLATKMLDLCDNLGHVDYATLLFQQLEDPNVFSYNAIIRTYTHNHKHSLAITLFNQMLTRATKSALPDKFTFPFVIKSCAGLLCHRLGQQVHAHVCKFGPNSHAITENALIDMYTKCGDLSGAYQVFEEMSERDAVSWNGLISGHARLGHMKSAREVFDEMPCRTIVSWTTMVNGYARAGCYVDALEIFCEMQVVGIEPDEISVISVLPACAQLGALEVGKWVHVYSDKSGFLKKTGVCNALVEMYAKCGCIDEAWRLFDQMVEKDVVSWSTMIGGLANHGKGHAAIQVFEDMQKAGMTPNGVTFVGVLTACAHAGLWNEGLRYFDVMRVDYQLEPEIEHYGCLVDLLGRSGRLDQALDTILKMPMQPDSRIWNSLLSSCRIHRNLEIAVVAMEQLLELEPEESGNYVLLANIYAELGKWEGVSNVRKLIRSKRIRKTPGCSLIEVNNVVQEFVSGDDSKAFSQDVFWILEGLSLHQTRTNDFMKFIEEDAG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3330 531 Pfam PPR repeat family 304 352 IPR002885 -
Ssu1g3330 531 Pfam PPR repeat family 68 119 IPR002885 -
Ssu1g3330 531 Pfam PPR repeat family 204 251 IPR002885 -
Ssu1g3330 531 Pfam E motif 422 484 IPR046848 -
Ssu1g3330 531 PANTHER OS05G0439300 PROTEIN 3 523 - -
Ssu1g3330 531 TIGRFAM PPR: pentatricopeptide repeat domain 147 173 IPR002885 -
Ssu1g3330 531 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Ssu1g3330 531 TIGRFAM PPR: pentatricopeptide repeat domain 175 201 IPR002885 -
Ssu1g3330 531 TIGRFAM PPR: pentatricopeptide repeat domain 277 307 IPR002885 -
Ssu1g3330 531 TIGRFAM PPR: pentatricopeptide repeat domain 71 98 IPR002885 -
Ssu1g3330 531 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Ssu1g3330 531 Gene3D Tetratricopeptide repeat domain 261 371 IPR011990 GO:0005515
Ssu1g3330 531 Gene3D Tetratricopeptide repeat domain 372 507 IPR011990 GO:0005515
Ssu1g3330 531 Pfam PPR repeat 175 202 IPR002885 -
Ssu1g3330 531 Pfam PPR repeat 147 172 IPR002885 -
Ssu1g3330 531 Pfam PPR repeat 379 403 IPR002885 -
Ssu1g3330 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Ssu1g3330 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Ssu1g3330 531 SUPERFAMILY TPR-like 69 462 IPR011990 GO:0005515
Ssu1g3330 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Ssu1g3330 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Ssu1g3330 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 172 IPR002885 -
Ssu1g3330 531 Gene3D Tetratricopeptide repeat domain 129 260 IPR011990 GO:0005515
Ssu1g3330 531 Gene3D Tetratricopeptide repeat domain 3 128 IPR011990 GO:0005515
Ssu1g3330 531 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 523 - -
Ssu1g3330 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3330 Ssu-Chr1 86307603 86309198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3330 17 512 Glycoside Hydrolase AT3G49170 32.604 2.00e-88 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3330 - - gmx:100806006 962.985