Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3323 ATGGGAGAAGCAGGGGTAGAGGAGGTTCCTGAATTCAAGTGGGGCAAAAGGAAAGGGATTGGTGGTAGAAAGAAGGATGTGCAATTTTACGAATCGTTTTCCTACGATGGTGTGGAATACTCCCTCTTCGACTCTGTATTTCTCTACAAGGAAGGTGAACCCCAGCATTTTATTggtaaaatcattaaaatatggGAGAACGCTGATAAGAGCAAGAAAGTTAAGGTTCTGTGGTATTTTCGTCCTAGTGAGatcctaaactttttggaaggAAGTGAAACACTTGACAATGAGTTGTTTTTGGCATCTGGTGAAGGCGAAGGGCTTGTAAATATCAATCCGCTGGAAGCTATTGCTGGCAAATGCAATATTGTTTGCATTTCGAAGGACAGTAGGAATCCCTATCCATCGGATGAAGAAGTTCAAATGGCTGAATTTGTCTTCTATCGTTTCTTTGATGTTGGGAAGCGTAAAATAATGGACAAGATAGATGATAAGATTGCTGGAATTGAAGttaaaaatatttttaacaatttagatAGTCAAAAGCTTGTTGGTCTTGTGAAACCTGGTTTAGACAAGAAAGAAGTTAGTGGGGAATTCATGGCAAGTAATGAAGCGGTGGCtcttttgagtaaaaaaaacaGTCAGCCTTTGATTGAAAAACCAGATGGCAAGTGTTTTGACACATTAGTTAGAGAAAATGCTGATTCTAAGTCATTGTTTGGAAAAAAACCTACTTGTAGCACTGATGTAAAGGAATCAAGTAGACCTACTGATGCTTTGCACACTATTTCCAACGACAAGATTGTGCATCAAGctaaagttgaagaaaatgggGGTTGTATGGCTTCTTTGGTTAAACAAAAATCATCTACTAAACTATCACATGGTTCTAGAGCTGGTTTGGAAGAGAGGGAAATAGCTAAAATGGATGATGGGCGTGGAAATGTCTCTATTGAGAAGAACATTTTGACGTCTAGGGTTGATTCAAAAAGGGATGATCGTGAGGATGTTGGTGTCCCTATTGGACAAATTAACAAGGGATTAGCGGAGGAAAAGGCTTCCAAGAAGGAAAAATGTGGTGGTTTTGTTAAGGTTTCTAGTGCGAAGATGAATAATAATGGGCAAAATCGAAGGCTTATTACCTATGATGACGACGACGATGATGTGAAGACTATAACTCCATCTTCATCAAAGGATAAATACAAGCTTGAACGGGCAAATAATTCTTGTGATATGGAGGAACTCCCTTCCAAGAAGTTAAAGATCGACACGAAGCCAACAAAACTCACTAGTGACAAGTTGTGCAAAGAATCTTCAATGATTTCACCGAATGTGGAACACAAGCTAGATTTTCGTCCAATGGAAGTTACTCGAAGACCAGATGTTGATAGAAGCAAATGGTTTAAGGAAATTCCTTGGGAAGAAAGAATGAAAACTGCTTATGAGCAGGGAAAACTTGTGCTACTTCAAAACTTGGATCCATCTTTATCTTCATCAGAGGTACAGAATATTATTTGGACTGGCTTTAAAGAAAGTTGCACTGCAAAGGTGATCCAGAAAACTGCATACTCTAGCCCTCATTCTGgtcaagcttttgttatatttaaaaaaatggaagcaGCAGAGTCGGTTGTTAGAAAATTAGACGAGGGCTGTTTCTTAATGTCAAATGGGCGACCCCTTGTTGGAAGCATTGGAGTTCCTTGCTTTCCAGAAAAGAAGCCAATATTTTATGGTCATCATGTTGTTGATCAACTTCGAATGATGCAAATGCAACGAGAGATGAAAGATGCTGTATCCACATCACATTGTTCTCAGCCCAACAATATTGAATATGATATGGCCATAGAGTGGTGCTTACTGCAAGAAAGAGCAAACAAATCATGGAGAAAGTTGTATCagcgACAAGGCGAGGAGTTGAGTAAACTCAAAGCTAAGCTGAAGTCTAAAATTTAA 1962 0.3695 MGEAGVEEVPEFKWGKRKGIGGRKKDVQFYESFSYDGVEYSLFDSVFLYKEGEPQHFIGKIIKIWENADKSKKVKVLWYFRPSEILNFLEGSETLDNELFLASGEGEGLVNINPLEAIAGKCNIVCISKDSRNPYPSDEEVQMAEFVFYRFFDVGKRKIMDKIDDKIAGIEVKNIFNNLDSQKLVGLVKPGLDKKEVSGEFMASNEAVALLSKKNSQPLIEKPDGKCFDTLVRENADSKSLFGKKPTCSTDVKESSRPTDALHTISNDKIVHQAKVEENGGCMASLVKQKSSTKLSHGSRAGLEEREIAKMDDGRGNVSIEKNILTSRVDSKRDDREDVGVPIGQINKGLAEEKASKKEKCGGFVKVSSAKMNNNGQNRRLITYDDDDDDVKTITPSSSKDKYKLERANNSCDMEELPSKKLKIDTKPTKLTSDKLCKESSMISPNVEHKLDFRPMEVTRRPDVDRSKWFKEIPWEERMKTAYEQGKLVLLQNLDPSLSSSEVQNIIWTGFKESCTAKVIQKTAYSSPHSGQAFVIFKKMEAAESVVRKLDEGCFLMSNGRPLVGSIGVPCFPEKKPIFYGHHVVDQLRMMQMQREMKDAVSTSHCSQPNNIEYDMAIEWCLLQERANKSWRKLYQRQGEELSKLKAKLKSKI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3323 653 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682
Ssu1g3323 653 Gene3D - 8 161 IPR043151 -
Ssu1g3323 653 PANTHER PROTEIN ANTI-SILENCING 1 5 651 - -
Ssu1g3323 653 Pfam BAH domain 44 128 IPR001025 GO:0003682
Ssu1g3323 653 SMART BAH_4 38 164 IPR001025 GO:0003682
Ssu1g3323 653 CDD RRM_SF 489 563 - -
Ssu1g3323 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 487 563 IPR000504 GO:0003723
Ssu1g3323 653 SUPERFAMILY RNA-binding domain, RBD 479 564 IPR035979 GO:0003676
Ssu1g3323 653 PANTHER PROTEIN ANTI-SILENCING 1 5 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3323 Ssu-Chr1 86192808 86209783 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3323 - - aprc:113865076 938.717