Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3319 ATGGACTATTGCCTGcgagaaatagaaggaaagcaAGCACATGACCCGTTGTTCATGAACAATAACAAGCCACCTTCGTCCGCGGTGTGGGTTGATGGGCCTGTGATAGTAGGAGCAGGGCCTTCGGGGCTCGCAGTAGCAGCATGTCTCAAAGAGAAAAGTGTCGGAAGCGTGATTCTAGAGAGATCCAACTGCATAGCTTCCCTGTGGCAGCTTAAGACCTATGATCGCCTACGCATTCATTTGCCAAAGCAATTCTGCGAGCTTCCCTTCATGGGGTTCCCCTCTCACTTCCCAACATACCCTTCAAAGCAACAGTTCGTAGGGTACTTGGAAACTTACGCGGAGAGGTTTGGGATTAGGCCAAGGTTCAATGAGACGGTGAAGCATGCAGAGTTTGATCACGAACTCGGCTTCTGGCGGGTGAGGAGTTTCAACAAGGCGGAGAAGACGACGGAGTACATGTGCCGGTGGCTGATCGTGGCCACCGGCGAGAATGCGGAGGCGGTGGTGCCGGATATTGAAGGGATAGGGGAGTTCGGTGCCCCCATAAGGCACACGAGCTTGTATAAGAGTGGGGAAGAGTTCAGAGGGAAGAGGGTTTTGGTCGTGGGCTGTGGGAATTCGGGGATGGAAGTGTGCTTAGATCTTTGCAACCATAATGCTACTCCATCTCTTGTGGTCAGAGACACAGTACACGTCCTACCACGACAGATGCTGGGAAAATCAACTTTCGGGTTGTCCATGTGGTTGCTCAAGTGGTTACCCATGCGACTTGTCGATCGGTTGCTGCTAATGGTGTCATGGCTTATGCTCGGTGACACCGCTCGATTCGGATTGGATCGACCGCGTTTGGGTCCCCTCGAACTCAAAAACCTGTCAGGAAAGACCCCTGTGCTAGATGTGGGTACCCTTGCCAAGATTAAAGGTGGAGACATTAAGGTATTTCCAGCAATTAAGCGGCTTAAACGTCACACAGTGGAATTTGTGGATGGAAGGACAGAGAATTATGATGCAATCATATTGGCTACTGGTTACAAAAGCAATGTACCCTATTGGCTTAAGGAAGAAGATATGTTCTCTAAGGAAGATGGGTACCCTAGGAGGCCATTTCCAAACGGGTGGAAAGGTGAAAATGGGCTCTATGCGGTGGGTTTTACCAAAAAGGGACTACTTGGTGCATCCATGGATGCAAAGAGAATAGCTGAAGACATTGAAAGGTGTTGGGAAGCTGAGGGAAATCATAGAACTGCTTTTGCTCGGTCACACTTACCGCAACCAAATTCATAA 1290 0.4907 MDYCLREIEGKQAHDPLFMNNNKPPSSAVWVDGPVIVGAGPSGLAVAACLKEKSVGSVILERSNCIASLWQLKTYDRLRIHLPKQFCELPFMGFPSHFPTYPSKQQFVGYLETYAERFGIRPRFNETVKHAEFDHELGFWRVRSFNKAEKTTEYMCRWLIVATGENAEAVVPDIEGIGEFGAPIRHTSLYKSGEEFRGKRVLVVGCGNSGMEVCLDLCNHNATPSLVVRDTVHVLPRQMLGKSTFGLSMWLLKWLPMRLVDRLLLMVSWLMLGDTARFGLDRPRLGPLELKNLSGKTPVLDVGTLAKIKGGDIKVFPAIKRLKRHTVEFVDGRTENYDAIILATGYKSNVPYWLKEEDMFSKEDGYPRRPFPNGWKGENGLYAVGFTKKGLLGASMDAKRIAEDIERCWEAEGNHRTAFARSHLPQPNS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3319 429 SUPERFAMILY FAD/NAD(P)-binding domain 198 412 IPR036188 -
Ssu1g3319 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 196 220 - -
Ssu1g3319 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 33 55 - -
Ssu1g3319 429 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 23 418 - -
Ssu1g3319 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 200 218 - -
Ssu1g3319 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 34 53 - -
Ssu1g3319 429 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 23 418 - -
Ssu1g3319 429 Pfam Flavin-binding monooxygenase-like 36 353 IPR020946 GO:0004499|GO:0050660|GO:0050661
Ssu1g3319 429 Gene3D - 34 414 IPR036188 -
Ssu1g3319 429 SUPERFAMILY FAD/NAD(P)-binding domain 35 233 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3319 Ssu-Chr1 86018939 86021787 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3319 K11816 - gmx:100799546 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3319 1 86018939 86021787 Ssu1g3319 1 86018939 86021787 ECH