Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3318 ATGTCCGACGCCCGAGTCGCGCAGCTTCTTCAGGACCTTCACGCCGAGGTGGAGCGCGACAGGCTCAGGGAGCGAAACGAGCGTCTGAGGCTCGGCTTGGACACCGCCGACATCGACGCTGAGTCGGAGCACGACTACATGGGCGTGGGCCCCCTCATCGAGAAGCTGGAGAAGGAGAAGCTCCGGGACCCCCCGACCTGCACCGCTACGAGGAGCCCACCGACTCCGACACCGACTCCGACGAAGAAACGAGGCCGAGGCCGACAAGAGGCTCCGGGACTTCGAGAGAAAGTTCGAGAAGCACCAGGACCTGCTCAGGAGCTTCACCGACGCCGAAACCCTCGACGACGCCTTCAGGTGGATGGGCAAAATCGACAAGTTCGAGCACAAGCACTTCAGGCTCCGCCCCGAGTACAGGTGGCGACGGAGCAGAAGGATAAGTTTGTTCTGCAGAACAAGCTCAATAGGGCGTTGAGGTTGGTGCAGTGGAAGGAGGCCTATGATCCTGACAACCCTGCCAACTACGGCGTGATTCAGCACCAGCAGCCGGACGCGGAGGCGCGGGAAGACGCTGAGTTGGAGAAGGAGAAGCAGATTGGGGAAGGAGATAATGCCGCCGGCGGCGGcggtgatgatgatgaggaggaGCAGGAGTTTGATGACATGAAGGAGAAGGATAATATACTGCTGGCCAGTAAGGCGCTGGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAACTGACTGAGCAGAAAAGAAAGCCTCTTTACCGGAAGGGTTTTGATACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACCAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGCAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCTGTCCCAGTTGCCCTTCAGAAGGCGTACGAGAAATGCTTTCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCTTATAAAAAGACCAAGGTGTATCTCTGGCCTGCTCCCACTACAACTGGCATGAAAGCCGGCAGAACGGTTGAAGCCATACTGCATTTAGCCGGTTTAAAGAATGTCAAGTCGAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTTAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTGTTGTGA 1260 0.5238 MSDARVAQLLQDLHAEVERDRLRERNERLRLGLDTADIDAESEHDYMGVGPLIEKLEKEKLRDPPTCTATRSPPTPTPTPTKKRGRGRQEAPGLREKVREAPGPAQELHRRRNPRRRLQVDGQNRQVRAQALQAPPRVQVATEQKDKFVLQNKLNRALRLVQWKEAYDPDNPANYGVIQHQQPDAEAREDAELEKEKQIGEGDNAAGGGGDDDEEEQEFDDMKEKDNILLASKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPAPTTTGMKAGRTVEAILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3318 419 PANTHER RIBOSOMAL S SUBUNIT 136 419 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu1g3318 419 SUPERFAMILY dsRNA-binding domain-like 257 327 - -
Ssu1g3318 419 Gene3D - 327 416 IPR014721 -
Ssu1g3318 419 MobiDBLite consensus disorder prediction 83 109 - -
Ssu1g3318 419 Gene3D - 217 323 - -
Ssu1g3318 419 ProSiteProfiles S5 double stranded RNA-binding domain profile. 262 325 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu1g3318 419 MobiDBLite consensus disorder prediction 56 125 - -
Ssu1g3318 419 Pfam Ribosomal protein S5, N-terminal domain 262 326 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu1g3318 419 MobiDBLite consensus disorder prediction 168 220 - -
Ssu1g3318 419 Coils Coil 225 255 - -
Ssu1g3318 419 MobiDBLite consensus disorder prediction 183 201 - -
Ssu1g3318 419 Pfam Ribosomal protein S5, C-terminal domain 341 408 IPR005324 GO:0003735|GO:0005840|GO:0006412
Ssu1g3318 419 SUPERFAMILY Ribosomal protein S5 domain 2-like 331 409 IPR020568 -
Ssu1g3318 419 PANTHER 28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL 136 419 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3318 K02988 - gmx:100809192 540.036