Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3317 ATGGTCCTTCTTCACCTGCCAAGGTTCCCTCTCTACTTGGTGACCTCACCTCACTCACTCCTCCCTCTTCGAACCTACTCCGCTTCCTCCAAAACCACCCTCTTGCGCGCACCCAAATCCACTCTCACCGCCTCAGACCCCGTAACCGTAGCCCCTTCCCCCACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCACCGGAGACCACTGTGTCCCTGGACAGTTCCAGAATCTTGAACGGTTCGAACATTCTGCTGAGTAACTACGCGAACGATGCGCAAGTGTTGCAAGCCGAATTTGTGAAAAGCAGTGTGAGAACCGAAGACTGCCCCTCCGATGGCCTCCCCGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGCAAATCGTCGCTCCTCAACTCCCTCGTGCGCAGGAAGAAGCTCGCCTTAACTTCGAAGAAACCTGGCAAAACGCAATGCATAAACCATTTTCGGATTAATGATAGCTGGTACCTGGTTGATTTGCCTGGATACGGGTATGCATCTGCACCGCAGGAACTTAGAATGGATTGGGAAAAATTCACCAAGGATTATTTCCTTAACCGGTCAACATTAGTTTCAGTATTCCTACTGATAGATGCTAGCATTCCtgctaaaaaaattgatcttgaTTATGCCAGTTGGTTGGGCCAGAATCAGATCCCGATGACATTGATCTTCACTAAATGTGACAAgcggaagaagaaaaagaatggagGCAAAAGACCGGAAGAAAATGTCAATGATTTTCAGAACTTGATTCGAGGCTTCTTCCAATCAGTGCCTCCATGGATCATGACTAGTAGCGTTACCAATGAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAG 894 0.4776 MVLLHLPRFPLYLVTSPHSLLPLRTYSASSKTTLLRAPKSTLTASDPVTVAPSPTELSLEKLFVPPETTVSLDSSRILNGSNILLSNYANDAQVLQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYASAPQELRMDWEKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEENVNDFQNLIRGFFQSVPPWIMTSSVTNEGRDEILLHMAQLRNYWLKH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3317 297 Pfam 50S ribosome-binding GTPase 117 234 IPR006073 GO:0005525
Ssu1g3317 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 293 IPR027417 -
Ssu1g3317 297 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 113 293 IPR030393 GO:0005525
Ssu1g3317 297 CDD YihA_EngB 116 290 IPR030393 GO:0005525
Ssu1g3317 297 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 36 294 - -
Ssu1g3317 297 Hamap Probable GTP-binding protein EngB [engB]. 102 291 IPR019987 GO:0005525
Ssu1g3317 297 Gene3D - 89 293 IPR027417 -
Ssu1g3317 297 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 36 294 - -
Ssu1g3317 297 TIGRFAM GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 97 285 IPR019987 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3317 Ssu-Chr1 85972664 85976673 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3317 K03978 - gmx:100784426 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3317 1 85972664 85976673 Ssu1g3317 1 85972664 85976673 ECH