Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3316 ATGGCTCCACCGCCACCGCAGTCTCAGCGATCTCCCTCGCCGTCGCAGCCATCCGGGAAGAGTGAAGTGTCCGATCTGAAATCACAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCAGGTGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCGTCTCTCTTTGGCGAGATGGTAATGTGCTCCGCAACATCCGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCGAAGGTCAATCCTGATCTTGCACTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGACGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCACTCCGAGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCAGATTTTCCAGCAACGGTGAAGCATCTGATGCTTAATGACCCTGATACTCAGGTAGTCGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCGGAGGAAGCGTCCAGGGAGAGAGAAACTCTACTCAGCAAGCCAGTTGTATATTACCTTTTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGCTGGAATTGGTGGCCAAGTACATTCCGTCAGATAACagtgaaatatttgatataatgaATCTCCTTGAAGATAGACTCCATCATGCAAATGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTACAGTTGACTTTGTCTATGGCTGATGTTCATCAGCAGGTATATGAGCGTATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAGTTTTAAGTCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCTTATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTACAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTTAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATTAGTAGCAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAATTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCCCCTGAAACTCAAAAAGCATTAGGAGCTGCTTTGGCTGCTGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCAGTGGCAGAGAGTGTGGTTAACCCTCCAAAGCAAGCTGTTTCAGTATTTGCTGATACTCAGAGCAGTGAAATCAAAGATCgcatatttgatgaatttaacaGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACATCGAGGGACATTTGAGTTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTGGAGATTCAGTTGTTCCAGCTCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAGGTACTTCAGaaaaagaggaaggaagagatcCTGGTAGCAATGGTTCTGTCTATGATGCTCCTTCCTATAATGGTTCATCTGCCCCTTCTACAACTTCACAACAGCTTGCAGATTTGGCATTTCCAAGTACCGGCATATCTGGTGAAGCTCCAGCTTCTAGCTTGGCAGTCGATGATCTGCTTGGTTTAGATTTTCCAGTTGGGACTGCAGCCACGCCTTCACCTCCTCCATTGAGCCTAAATCCAAAAGCTGTGCTGGATCCAGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCTCTATCAGAGGAATATTCTATAAGTCCTCAAGGAATCGCATCATTGACAACTCCCCATGCTCTCCTGCGTCACATGCAAAGTCATTCGATAAACTGCATTGCATCCGGTGGTCAGTCTCCCAACTTCaagttctttttctttgctCAGAAAGCAGAAGCAGCATCAGTGTATCTTGTAGAGTGTATGATCAACACATCGTCAGCCAAGTCGcagattaaaataaaagctGATGACCAAAGTTCATCCCAGGCATTCTCAACATTATTCCAATCAGCCTTGTCTAAATTTGGTTTACCTTGA 2538 0.4169 MAPPPPQSQRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPATVKHLMLNDPDTQVVANCLSALQEIWTLESSTSEEASRERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVAKYIPSDNSEIFDIMNLLEDRLHHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESGDSVVPAQRVEANDKDLLLGTSEKEEGRDPGSNGSVYDAPSYNGSSAPSTTSQQLADLAFPSTGISGEAPASSLAVDDLLGLDFPVGTAATPSPPPLSLNPKAVLDPGTFQQKWRQLPISLSEEYSISPQGIASLTTPHALLRHMQSHSINCIASGGQSPNFKFFFFAQKAEAASVYLVECMINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3316 845 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 17 843 IPR026739 GO:0016192
Ssu1g3316 845 Pfam Adaptin N terminal region 35 552 IPR002553 GO:0006886|GO:0016192|GO:0030117
Ssu1g3316 845 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g3316 845 SMART B2_adapt_app_C_2 723 840 IPR015151 GO:0006886|GO:0016192|GO:0030131
Ssu1g3316 845 MobiDBLite consensus disorder prediction 628 676 - -
Ssu1g3316 845 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 17 843 - -
Ssu1g3316 845 MobiDBLite consensus disorder prediction 642 657 - -
Ssu1g3316 845 Pfam Beta2-adaptin appendage, C-terminal sub-domain 726 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
Ssu1g3316 845 MobiDBLite consensus disorder prediction 13 31 - -
Ssu1g3316 845 MobiDBLite consensus disorder prediction 662 676 - -
Ssu1g3316 845 PIRSF Beta_adaptin 11 845 IPR016342 GO:0015031|GO:0030276
Ssu1g3316 845 Gene3D - 714 843 IPR012295 -
Ssu1g3316 845 Gene3D - 15 610 IPR011989 -
Ssu1g3316 845 SUPERFAMILY ARM repeat 29 599 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3316 Ssu-Chr1 85946881 85959194 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3316 - - gmx:100801153 1573.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3316 1 85946881 85959194 Ssu1g3316 1 85946881 85959194 ECH