Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3306 ATGCGCCCACCGGTTATTCTCAAAACTACCTCTCCTTCCGATTCTTCTTATTCTTCACCCAGCGATCGCAGACTCAACACTCTCGCAAGACACTTCGTTAGCGTTCACGATCAAATGGCTTCTCACGACAACATCTCTGCTTCGCCAACCGCTGCTTCTGATTCCGTCTTTGCTCACCTCGTCCGTGCGCCCGAAGATCCTATCCTCGGGGTGACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGTGTTGGGGCTTATCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAGCAGCAACTCGTGAATGACCCGTCACGCAACAAGGAATATCTTCCTATTGTTGGGCTtgctgattttaataaattgagtGCTAAGCTTATTTTTGGTGCTGACAGCCCTGCTATTCAAGAGAACAGGGTTACCACTGTTCAAGGCCTGTCTGGAACTGGTTCATTAAGAGTTGGGGGTGAATACTTGGCTAAACACTATCACCAAAGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCAAAGGTTTTCAACTTGGCAGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTCAAGGACTTCTAGAAGATCTTGGTTCTGCTTCATCTGGATCTATTGTTTTGCTACATGCATGTGCACATAACCCCACTGGTGTTGATCCAACTCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTGCCATTCTTTGACAGTGCTTATCAGggTTTTGCTAGTGGAAGTCTAGATACAGATGCCCAGCCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCACAAAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCGGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAACTTGTGATTAGGCCCATGTACTCAAATCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGATCGGGATTTGTACAATGAATGGACTATTGAGTTGAAGGCAATGGCTGACCGTATTATCAATATGCGCCAACAACTTTTTGATGCTTTATGTTCCAGAGGCACACCTGGTGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACAGGATTGAATTCTGAACAAGTTTCCTTCATGACTAAGGAGTACCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACAGTCCCACATCTGGCAGATGCGATACATGCAGCTGTAACTCGAGTTGTCTAA 1374 0.4491 MRPPVILKTTSPSDSSYSSPSDRRLNTLARHFVSVHDQMASHDNISASPTAASDSVFAHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLVNDPSRNKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEYLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSASSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDTDAQPVRLFVADGGELLVAQSYAKNMGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSNPPIHGASIVAAILKDRDLYNEWTIELKAMADRIINMRQQLFDALCSRGTPGDWSHIIKQIGMFTFTGLNSEQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTRVV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3306 457 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 300 313 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ssu1g3306 457 PRINTS Aspartate aminotransferase signature 398 416 IPR000796 GO:0006520|GO:0008483
Ssu1g3306 457 PRINTS Aspartate aminotransferase signature 262 274 IPR000796 GO:0006520|GO:0008483
Ssu1g3306 457 PRINTS Aspartate aminotransferase signature 330 355 IPR000796 GO:0006520|GO:0008483
Ssu1g3306 457 PRINTS Aspartate aminotransferase signature 231 250 IPR000796 GO:0006520|GO:0008483
Ssu1g3306 457 Gene3D Aspartate Aminotransferase, domain 1 62 449 IPR015422 GO:0003824
Ssu1g3306 457 PANTHER ASPARTATE AMINOTRANSFERASE 54 456 - -
Ssu1g3306 457 SUPERFAMILY PLP-dependent transferases 55 455 IPR015424 -
Ssu1g3306 457 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3306 457 CDD AAT_like 84 437 - -
Ssu1g3306 457 PANTHER ASPARTATE AMINOTRANSFERASE 54 456 IPR000796 GO:0006520|GO:0008483
Ssu1g3306 457 Pfam Aminotransferase class I and II 83 449 IPR004839 GO:0009058|GO:0030170
Ssu1g3306 457 MobiDBLite consensus disorder prediction 8 22 - -
Ssu1g3306 457 Gene3D - 116 357 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3306 Ssu-Chr1 85796152 85802094 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3306 K14454 - gmx:547509 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3306 1 85796152 85802094 Ssu1g3306 1 85796152 85802094 ECH