Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3302 ATGGTGAACCCCTTGGTGGAACGTGCCACGAGCAGCATGCTAATGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGGATAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTACACTGACTCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCTGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAagCCTGATCATCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTACTATGCAGCATACCAGGAACTTTTGCGTGCTGGGGCAGCATTCCCTCAGAGGTCTGAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGACATCATACCCTCAAAATATACGAGACTCTGTTGCTCAGCAAGACACAGCTGAGTCCTCAGCGGACTCTGAGTTTCCAACCCTAAGTTTGACTGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCAATAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTGGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTAAATTCTACTTCGGACGAGTCACTGCTATGCCAAGGACTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCTAAGCATGAATCCGTTGCTTCAGGAACTTCTGCTTCAGGAACTTCTGCTCAAAATCATACTGAGAAACTGAAGCCTGCACCTACTGGAGCACTTGCAGATGTTGATGGTCCTTTGGTTGATATTGGAGATACTAGTAAACAAACTGATGGGAGATCGTCTTCTAGCGCTGAAGCTGGGTCTCAAACATTGAATCAGTTACTGCTTCCTGCACCCCCAACATCACATGGATCAGCTCCCCTTTCAAAGGTTGATCTCAAAGTGGACCTGCTCAGTGGTGATGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTAGTTCCCCTAGGAGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTACTTCTGTTAATACCCAGCCAATTAATGTCGCTAGCCAAACCAGTCCGTTAGCTCCTCAACTTCAGCAACAGCAGACTTTCATATCTCAAGGCCTATTTTACCCCAACGTAAGTGTGCCAAATGTGGGGTCACCTCGGTATGAGCAATCACCATATATGCAGAGCACAGGTCCTTCCTGGAATGGTCAGGTTGCACAGCAGCAACAGCCCCCTTCACCAGTTTATGGTACAGAAAATGGTGGATCATTTCCGCCACCTCCCTGGGAAGCTCAACCTACAGACAATGATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTCACTCAAATGGTTATGACGCATATACAAAGTGCTGCACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCAAATGCTAGCCATGTGTCAACGATCAATAACCATGTTCAAAGCAATCAATTAGGTTTGCACCCTCAGCATATTCAGGGTGTTGCTGGTCCCTATATGGGTATGGGTTCACATCAAATGTATAATAGTCCTGTGGCTTCCGTGTATCCTCAACAGATGTATGGCAACCAATTCGTAGGATATGGCTATGGTCAGCAACAAGGGGTTCAATATGTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTGCTACATCCTATGTGCCATCTGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAACATGGCAAAAGTGAAACCAAAACCTACGCCTGACCGAGGTGGTAGCATGTAG 2019 0.4567 MVNPLVERATSSMLMGPDWALNMEICDILNRDPGIAKDVVKGIKKRIGSKVPRVQILTLTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDHHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAAFPQRSEQSAPVFTPLQTQPLTSYPQNIRDSVAQQDTAESSADSEFPTLSLTEIQNARGIMDVLAEMLNAIDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESVASGTSASGTSAQNHTEKLKPAPTGALADVDGPLVDIGDTSKQTDGRSSSSAEAGSQTLNQLLLPAPPTSHGSAPLSKVDLKVDLLSGDDYNSPKAETSLALVPLGEQQPASPMSQQNALVLFDMFSNGSNAPTSVNTQPINVASQTSPLAPQLQQQQTFISQGLFYPNVSVPNVGSPRYEQSPYMQSTGPSWNGQVAQQQQPPSPVYGTENGGSFPPPPWEAQPTDNDSPVAGSQYPQPLQVTQMVMTHIQSAAHPQGPQAMGHDQAVGMYMQPNASHVSTINNHVQSNQLGLHPQHIQGVAGPYMGMGSHQMYNSPVASVYPQQMYGNQFVGYGYGQQQGVQYVEQQMYGLSVRDDGALRNSYQVSATSYVPSGKPSKPEDKLFGDLVNMAKVKPKPTPDRGGSM 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3302 672 MobiDBLite consensus disorder prediction 306 320 - -
Ssu1g3302 672 Gene3D - 1 148 IPR008942 -
Ssu1g3302 672 Gene3D - 183 276 IPR038425 -
Ssu1g3302 672 SUPERFAMILY GAT-like domain 140 269 - -
Ssu1g3302 672 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Ssu1g3302 672 CDD VHS 2 132 - -
Ssu1g3302 672 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Ssu1g3302 672 PANTHER TOM1-LIKE PROTEIN 1 666 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ssu1g3302 672 MobiDBLite consensus disorder prediction 443 502 - -
Ssu1g3302 672 MobiDBLite consensus disorder prediction 267 283 - -
Ssu1g3302 672 PANTHER TARGET OF MYB PROTEIN 1 1 666 - -
Ssu1g3302 672 MobiDBLite consensus disorder prediction 267 320 - -
Ssu1g3302 672 MobiDBLite consensus disorder prediction 635 672 - -
Ssu1g3302 672 CDD GAT_GGA_like_plant 188 264 - -
Ssu1g3302 672 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Ssu1g3302 672 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Ssu1g3302 672 Pfam VHS domain 4 129 IPR002014 GO:0035091|GO:0043130
Ssu1g3302 672 MobiDBLite consensus disorder prediction 443 474 - -
Ssu1g3302 672 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3302 Ssu-Chr1 85718035 85726858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3302 - - gmx:100805762 1134.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3302 1 85718035 85726858 Ssu1g3302 1 85718035 85726858 ECH