Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3301 ATGCAGGCGTCGCGGGCAAGGCTGTTCAAGGAGTACAAAGAGGTGCAGCGAGAAAAGGCAGTTGATCCTGATATTCAACTAGTCTGTGATGattctaacatttttaaatgGACGGCTCTTGTCAAGGGACCCTCTGAGACTCCTTATGAGGGGGGTGTGTTCCAGCTTGCTTTTTCTGTTCCGGAGCAGTATCCTCTGCAGCCGCCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACTGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACACTTCAATCTGTCTGTAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGCGATGTTAGAGGGTACCAATCCATGGCAAGAATGTACACAAGACTTGCAGCAATGCCAAAGAAAGGCTGA 474 0.462 MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALVKGPSETPYEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3301 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Ssu1g3301 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Ssu1g3301 157 CDD UBCc 7 148 IPR000608 -
Ssu1g3301 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Ssu1g3301 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 157 - -
Ssu1g3301 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Ssu1g3301 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Ssu1g3301 157 SMART ubc_7 6 153 - -
Ssu1g3301 157 PANTHER BNAA09G04490D PROTEIN 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3301 Ssu-Chr1 85704276 85707169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3301 7 123 Miscellaneous Gene Families AT3G17000 33.884 4.69e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3301 K10689 - tcc:18587943 324.324