Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3290 ATGGAAGCACTTGACTCCTTTTCAATTTCAGTGAGCCCGAGCACCTCTAACTCTAAATGCTCAGTTCATCAGCTGGAGAACATAGATGAGAATGCTCCTGCAGATTGCCCTGCATCATCTTGTCCCCCACCTGATACTCCAACTGAATCTATGGAGTTCCTAGCTAGATCATGGAGTCTTTCAGCCATGGAACTCACCAAAGCACTGCACAATACCAACATTACAATCTCCACCGGTATAGAGATGCCACTTTCATGCCCTTCAGGCAACCAATTTGATACCAAGAGTTCCACTGCTTCAAAGGATTCTTTATCTAACAGGTGTTACCCTCCAATTTCGCCAAAAGACAGTACCGAAAAGAAGCTTTACAGGAGCTTGCTAAGAGGGAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATTAGGACCCATAATGCTCATTTGCATGCTGCAGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCAGCAGTTGCAGCTTCAACAGCATCACCTGAAATGCCTTATGCCAACCAAAAGAACCCTCCAATGGCTTTTGCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGAGCTGAACATGATCAAATCTTAACAGTAGTCAACTCTGCCATTAATGCAAAAACCAATGGAGATATAATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCTGCAACTCTAAAGGCAAGGCTGCAAAAGGGGTCTGGAGCTACTGCAATTCCTCTTGTTGAGGAAAAGTGTGATGAAAGCAAAGAAGCAAACATCTTAACTGCACTGGACTACGTCTTTAGAGGTGGAGAACTTCTCAAACGTACTAGAAAAGGAGCTCTTCACTGGAAGCAAGTGTCtttcaatataaattcaaatttgcaGGTTGTAGTCAAAATGAAAAGCAAGCATATGGCAGGAACATTcacgaaaaagaagaaatATATAGTCACTGGAGTTTGCAATGATATCCCAGCTTGGCCCGGAAGGGAGAAGGAAGACATCAATGAAAAAAGGGcatattttggaataaaaaCAACAGACAGGACAATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTTTGGCTTGAGGGGATCCAGTATATGTTGAATTGCCGTGTCAAGtag 1197 0.4227 MEALDSFSISVSPSTSNSKCSVHQLENIDENAPADCPASSCPPPDTPTESMEFLARSWSLSAMELTKALHNTNITISTGIEMPLSCPSGNQFDTKSSTASKDSLSNRCYPPISPKDSTEKKLYRSLLRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEMPYANQKNPPMAFAAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGSGATAIPLVEEKCDESKEANILTALDYVFRGGELLKRTRKGALHWKQVSFNINSNLQVVVKMKSKHMAGTFTKKKKYIVTGVCNDIPAWPGREKEDINEKRAYFGIKTTDRTIEFECGSKGDKQFWLEGIQYMLNCRVK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3290 398 Pfam Auxin canalisation 44 266 IPR008546 -
Ssu1g3290 398 MobiDBLite consensus disorder prediction 91 116 - -
Ssu1g3290 398 PANTHER EXPRESSED PROTEIN 16 396 IPR040269 -
Ssu1g3290 398 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 16 396 - -
Ssu1g3290 398 Pfam Plant pleckstrin homology-like region 292 395 IPR013666 -
Ssu1g3290 398 Gene3D - 268 397 IPR011993 -
Ssu1g3290 398 SUPERFAMILY PH domain-like 275 392 - -
Ssu1g3290 398 MobiDBLite consensus disorder prediction 91 112 - -
Ssu1g3290 398 ProSiteProfiles PH domain profile. 286 394 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3290 Ssu-Chr1 85477221 85480617 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3290 - - gmx:100814154 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3290 1 85477221 85480617 Ssu1g3290 1 85477221 85480617 ECH