Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3287 ATGGATTTCTATGGCAAGAGAACCCTTCTCAGCCTGATGGAGAACGAAAAGCCAGAACCACCACAATCCCCGGTTCACCTTCGCGTCCAAACCCACAGAGAGATTAGCGAACAAGACGTTCAGTTTAGTCCCCCAAGGCCTTCAAGCTCCGATGGCATGTTCTCAATGATGCCAGACTCACCGTGGACACTCTCCCCTCTCCCAACCCCTTCACCTTCTTTGCTTTACCACTGCATCGCTTCCCTCCACCGCCACGAAGGTAACATCTACGCAATCGCAGCCTCAAAGGGTTTGGTCTTCACTGGCTCCAACAGCAGCAGAATCCGTGTGTGGAAGCAGCCAGATTGCATGGACAGAGGGTACCTCAAAGCAAGGTCGGGTGAGGTAAGAGCCATTTCGGCTTACAGCAACATGCTTTTCTCCACGCACAAGGACCACAAGATCAGGATATGGACCTTCACCGTTTCAGATAACTTCAAGTCCAAGAAAGTAGGTACTCTCCCTAGAAAAACCTCTATTCTTATGTTCCCCTCAAGAGGAAAGAGCACGCCGAGGCACAAAGACTCCGTGTCCTGCATGGCTTATTACCACTCCGAAGGCCTCTTGTACACTGGCTCTCACGACAGAACAGTGAAGGCGTGGCGTGTCTCGGATAGAAAATGCGTGGACTCTTTTGTGGCACATGAAGATAACATCAATGCCATATTGGTGAACCAAGACGATGCTTGTCTTTTCACCGGTTCCTCTGATGGGTCGGTGAAAATATGGAGAAGGGTTTACACGGAAGACTCGCACACTCTCACGATGACTCTCAAATTCCAACCTTCCCCCGTCAATGCTCTTGCACTGAGTTGCTCATTCAACCACGGTTTCCTCTATTCAGGGTCCTCGGATGGGATGATAAACTTCTGGGAGAAGGAAAGGCTGTGTTATAGGTTCAACCACGGAGGGTTCTTGCAGGGTCACCGTTTTGCGGTTCTTTGTTTAGCCACGGTTGGGAACATGATATTCAGCGGGTCAGAGGATACCACGATAAGGGTGTGGAGGAGAGAGGAAGGGAGTTGCTACCACGAGTGTTTGACCGTTTTGGATGGGCATAGAGGGCCAGTGAGATGCCTGGCTGCGTGTCTCGAGATGGAAAAGGTTGTGATGGGATTCTTGGTGTATAGTGCTAGTTTGGACCAAACATTTAAGGTGTGGAGGATTAAGGTTTTGCCCGATGAAAAGATGTGCATGGACTACAGTGATCAGTGTGAAGCCAGGGTGAAGATTAGGGACTATGATATGAGCCCGGTTTTGTCGCCTTCGTGGGTAGAGAAGAAGCTTCAAGCGAGTTATAATTTTCATCAGTAG 1353 0.4967 MDFYGKRTLLSLMENEKPEPPQSPVHLRVQTHREISEQDVQFSPPRPSSSDGMFSMMPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKARSGEVRAISAYSNMLFSTHKDHKIRIWTFTVSDNFKSKKVGTLPRKTSILMFPSRGKSTPRHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNINAILVNQDDACLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHGFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSDQCEARVKIRDYDMSPVLSPSWVEKKLQASYNFHQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3287 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Ssu1g3287 450 PANTHER OS01G0232200 PROTEIN 1 441 - -
Ssu1g3287 450 SMART WD40_4 115 152 IPR001680 GO:0005515
Ssu1g3287 450 SMART WD40_4 312 349 IPR001680 GO:0005515
Ssu1g3287 450 SMART WD40_4 264 305 IPR001680 GO:0005515
Ssu1g3287 450 SMART WD40_4 177 215 IPR001680 GO:0005515
Ssu1g3287 450 SMART WD40_4 75 112 IPR001680 GO:0005515
Ssu1g3287 450 SMART WD40_4 218 257 IPR001680 GO:0005515
Ssu1g3287 450 SMART WD40_4 356 401 IPR001680 GO:0005515
Ssu1g3287 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 358 IPR001680 GO:0005515
Ssu1g3287 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Ssu1g3287 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Ssu1g3287 450 CDD WD40 78 401 - -
Ssu1g3287 450 MobiDBLite consensus disorder prediction 36 55 - -
Ssu1g3287 450 Pfam WD domain, G-beta repeat 358 400 IPR001680 GO:0005515
Ssu1g3287 450 Pfam WD domain, G-beta repeat 186 214 IPR001680 GO:0005515
Ssu1g3287 450 Pfam WD domain, G-beta repeat 318 348 IPR001680 GO:0005515
Ssu1g3287 450 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Ssu1g3287 450 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Ssu1g3287 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 217 - -
Ssu1g3287 450 SUPERFAMILY WD40 repeat-like 77 403 IPR036322 GO:0005515
Ssu1g3287 450 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Ssu1g3287 450 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Ssu1g3287 450 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Ssu1g3287 450 MobiDBLite consensus disorder prediction 34 55 - -
Ssu1g3287 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Ssu1g3287 450 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 441 IPR045182 -
Ssu1g3287 450 Gene3D - 62 173 IPR015943 GO:0005515
Ssu1g3287 450 Gene3D - 174 428 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3287 Ssu-Chr1 85423443 85424795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3287 186 405 Miscellaneous Gene Families AT5G08390 23.789 1.51e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3287 - - gmx:100814685 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3287 1 85423443 85424795 Ssu1g3287 1 85423443 85424795 ECH