Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3284 ATGGCAACTTCAAACACGAGTCTTGCACCTAAATATTGCTCCGTTCAGAAACGACCCTTTATCGTCCCACGCCATCCCATTATTACTTCAGGACTTTCCTCCGCGTTCAAGCCGATCTTGAGAGCGTTGCCTCAAATTCCGCTGCAAATTGACGCTTCCAAAGCCATCACAgacattaaaactaaatttcttAACGCTGTGGTGGATTCAGCATTTGAGTTTGTGGACCAGCTAGTGCTTTCATCTCAGAGTAACTTTGCTCCGGTGGAGGAGTTAGGGGAAGCCGTGACTATCACTAACATCGAAGGCGACATACCAGATCACTTTCCCGAGGGTGTCTACATTAGAAATGGACCAAACCCACTCTTTGGAGGATTGAAATCATCCAAGTCTATCTTGGGGAGGACAAATAGCGTTTGGGTGGAAGGAGAAGGAATGCTTCATGCTTTGTATTTCAAAAGGCAAAGTGACGGGTGCTGCACCATCGTCTACAACAACAGATACGTTGAAACTGTAACATACAAGCTTGAGAAACAAAGTATCAAGCCTTTGTTTATCCCTGCCGTAAAAGGAGATTCCTTGGCAGTTTTGTTTTCTATGCTTCTAAATGGGCTGAGATATGGACAACTAAATAAAGATTATAGCAACACCAATGTGATTGAGCATTCAGGCAAGTTCTATTCGGTTTCGGAGAATCACATCCCACAAGAGATTGACATCTTCACACTAAATACTTTAAAGTACTGGGATGTCAATGGAGCATGGAATCGTCCTTTCGCCAGTCACCCTAAgAAAGTTCCAGGTACAGGAGAGCTGGTCATTTTTGGGGTAGATGCAGCTAAACCGTATCTTGAAATTGGAATAGTTTCTGCTGATGGAAAGGAATTGGTTCATAAAGTAGACATAAAACTTGACAGATGCTCTTTATGCCATGATATAGGTATCACAAGCAGGTATAACATTCATTATCAAACCACAGAAGAAATTATAAGCCAGGCTATATTGACTAGAATCAGAATTGACGTATTAATCAAATACGACAGGGAGAAATATGCCAGGATTGGAATAATGCCGCTCTATGGTGATGCAAACTCAATCCAGTGGTTTGAGGTAGAACCTAATTGCACATTTCATATCATCAATTCCTTTGAGGATGGTCATGAGGTTGTGTTGTGGGGTTGTAGAGCATTAGATTCAATCATTCCAGGACCTGAAGATGGTCTAAATGAATCTACGTTGTTCTCTCAGTGTTACGAATGGCTATTAAACATGAAAAGTGGGGAGGTTAAAGAGAGATATCTCACTGGACCAGAGCAATTTATGGATTTTCCAGTAATTAATGCAAGTTTTACAGGAATTAAGAATAGATATGGATACACCCAAGTGGTGGATCCCACTGCAAGTTATGCTGcaggtaaatttttaaaagacaAAGAGCCTGTAAGGGTGGAATATCATAGGTTTGAAAGGAATGTATTTTGCACTGGATCTGCCTTTGTCCCTAAGGAAGGTGGTCTTGAGGAAGATGATGGGTGGATAATCACTTTTGTTCACAATGAAGATACTGGCATATCTCAAGTTCATATAATTGACACAAAGAAGTTTTCTGGCGAGGCAGTTGCCAAAATTACCATGCCTTGCAGAGTTCCATATGGATTTCACGGAGCTTTCATGCCAATCTCATTTTAG 1689 0.405 MATSNTSLAPKYCSVQKRPFIVPRHPIITSGLSSAFKPILRALPQIPLQIDASKAITDIKTKFLNAVVDSAFEFVDQLVLSSQSNFAPVEELGEAVTITNIEGDIPDHFPEGVYIRNGPNPLFGGLKSSKSILGRTNSVWVEGEGMLHALYFKRQSDGCCTIVYNNRYVETVTYKLEKQSIKPLFIPAVKGDSLAVLFSMLLNGLRYGQLNKDYSNTNVIEHSGKFYSVSENHIPQEIDIFTLNTLKYWDVNGAWNRPFASHPKKVPGTGELVIFGVDAAKPYLEIGIVSADGKELVHKVDIKLDRCSLCHDIGITSRYNIHYQTTEEIISQAILTRIRIDVLIKYDREKYARIGIMPLYGDANSIQWFEVEPNCTFHIINSFEDGHEVVLWGCRALDSIIPGPEDGLNESTLFSQCYEWLLNMKSGEVKERYLTGPEQFMDFPVINASFTGIKNRYGYTQVVDPTASYAAGKFLKDKEPVRVEYHRFERNVFCTGSAFVPKEGGLEEDDGWIITFVHNEDTGISQVHIIDTKKFSGEAVAKITMPCRVPYGFHGAFMPISF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3284 562 Pfam Retinal pigment epithelial membrane protein 88 559 IPR004294 GO:0016702
Ssu1g3284 562 PANTHER BETA-CAROTENE DIOXYGENASE 32 560 IPR004294 GO:0016702
Ssu1g3284 562 PANTHER OS06G0162550 PROTEIN 32 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3284 Ssu-Chr1 85384438 85389188 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3284 - - gmx:100817207 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3284 1 85384438 85389188 Ssu1g3284 1 85384438 85389188 ECH