Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3283 ATGACACTCCCAGTCGTTGATGTCGACCCAAGGTCGCCGATGCTCACACTCCCAGTCGTCGACATCGACCCAAGGTCGCCGGAACTCGCGCTCCCAGTTGTCAACAAAAGACCCTCCTATGTCTCAGACAATTCTCGTCACTACAACCTCCCACTCTTCCATGCCTTTAAGCCAATCAAGAAAATTCTGCCTGAAGTACCGTTGCAAATTGAAGATGTTCACAAAACTACGACAAAAACTGCAGCTAAATTACTTGACGCTTTTGTAGACTCATTCTTTGAATTTATTGACCAACCACTGCTTCCATCTCAGAGTAACTTTGCTCCCGTGGAGGAGTTAGGTGAAGCCATACTTGTGTCCAGAATCCAAGGACGAATTCCAGATGATTTTCCAGAGGGTGTATACATTAGAAATGGACCAAATCCactttttggaggactaaaatcaacaaattctaTCTTTGGGAGGTCAAGGCACATTTGGGTGGAAGGAGAGGGAATGCTTCACGCGTTGTATTTTAAAAGGTCAAGTCAAGGGAGCTGGATGGTCCTCTACAACAACAAGCACGTTGAAACCGATACATACAAGCTTGAAAAGCAACGAAGCAAACCATTGTTTCTACCGACCATAGAAGGCGATTCACTGGCCATTTTGTCTGCTTATCTGCTAAACTGGTTGCGATTTGGCAAAGTACACAAGTACATCAGCAACACCAATGTCTTTGAGCATTTGGGGAAGTTTTACTCAGTAGCTGAAAATCACATCCCACAAGAGATTGATATCTTTAccttgaaaactttaaaaaattgggATGTCAATGGCGCCTGGGATCGTCCTTTTACCAGTCATCCAAagAAAGCTCCAGATACAGGGGAACTAGTTACATTAGGGGTTGCGGCAACGAAACCTTTTGTCGTAGTTGGAATCATTTCTGCTGATGGAAAAAAATTGGTTCATAAAGTTGACCTTAAACTAAACAGGTGCACTCTTTGCCATGACATAAGTGTTACACAGAGGTATAATGTGATCATGGATTTTCCACTAACCATTGATCTAAACAGACTTCTTAGAGGAGGCCCattaataaagtataataaagaagaatacGCAAGGATTGGAGTAATGCCACGCTATGGTGATGCCAACTCAATCAAATGGTTTGAGGTGGAACCTAATTGCACTTTTCACATTATCAATTCTTTTGAGGATGGACACGAGGCAAGTTACCTAGAAGTTGTAGTGAGGGGATGCAGATCTCTAGATTCACTAATTCCTGGACCTGACCCAAGTTTGAAGGAATATGAGTGGTTATCTCGTTGTTATGAGTGGCGATTGAATATGCAAACGGGAGAAGTTAAGGAGAGAGATCTCTGTGGAGCCAACGTAGTTTATATGGATTTTCCTATGATCAATGGAAACTTCATAGGTATTAGGAATAGATATGCATACACTCAAGTAGTTGATCCCATTGCAAGCTCTACTCAAGGTAACactagagaattttttttttcttttctAGACAAAGAGCAACCTGAAGAGCCTATGAGAGTGGAATGCCATATGTTCGAGAATAATACATTTTGCAGTGGGGCTGCCTTTGTCCCTAGAGATGGGGGTCTTGAAGAAGATGACGGTTGGATCATAGCTCTTGTTCACAATGAAGATACTAACATATCTGAAGTTCGTATAATCGACACAAAGAAGTTTTCTGGTGAAACGGTTGCCAAAATTACAATGCCTCACAGAGTACCATATGGGTTTCATGGAGCATTCATGCCAATTTCATTTCAGGCACAGTAG 1800 0.4033 MTLPVVDVDPRSPMLTLPVVDIDPRSPELALPVVNKRPSYVSDNSRHYNLPLFHAFKPIKKILPEVPLQIEDVHKTTTKTAAKLLDAFVDSFFEFIDQPLLPSQSNFAPVEELGEAILVSRIQGRIPDDFPEGVYIRNGPNPLFGGLKSTNSIFGRSRHIWVEGEGMLHALYFKRSSQGSWMVLYNNKHVETDTYKLEKQRSKPLFLPTIEGDSLAILSAYLLNWLRFGKVHKYISNTNVFEHLGKFYSVAENHIPQEIDIFTLKTLKNWDVNGAWDRPFTSHPKKAPDTGELVTLGVAATKPFVVVGIISADGKKLVHKVDLKLNRCTLCHDISVTQRYNVIMDFPLTIDLNRLLRGGPLIKYNKEEYARIGVMPRYGDANSIKWFEVEPNCTFHIINSFEDGHEASYLEVVVRGCRSLDSLIPGPDPSLKEYEWLSRCYEWRLNMQTGEVKERDLCGANVVYMDFPMINGNFIGIRNRYAYTQVVDPIASSTQGNTREFFFSFLDKEQPEEPMRVECHMFENNTFCSGAAFVPRDGGLEEDDGWIIALVHNEDTNISEVRIIDTKKFSGETVAKITMPHRVPYGFHGAFMPISFQAQ 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3283 599 Pfam Retinal pigment epithelial membrane protein 108 593 IPR004294 GO:0016702
Ssu1g3283 599 PANTHER BETA-CAROTENE DIOXYGENASE 52 594 IPR004294 GO:0016702
Ssu1g3283 599 PANTHER OS06G0162550 PROTEIN 52 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3283 Ssu-Chr1 85348381 85362034 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3283 - - gmx:100817738 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3283 1 85348381 85362034 Ssu1g3283 1 85348381 85362034 ECH