Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3277 ATGGCTTTCACGGCCTTGCCTTCTGTCAGAAACTCCATCTCATGGCCAACTATGCTTGTTCCTGACATGTCCGATAACATTTCACTTCGAAATAAAGGCATCTATAAAGGGCAACGCAATCTGCGAGACTTAACCGTTGCAAATGTTGCAAGTCCATTACCTGCGATTGCCCCACCAACATCGGAGGAACGGCTGGCGACCACCGGCCGCCGCCAGCACCATGTTGCATGGACTAGTATAACGCAAGAGAGATGGGAAGGAGAGTTGCACGTTCAAGGACAAATACCACTATGGCTGAAAGGAACGTACCTAAGGAACGGGCCGGGCATGTGGCACATAGGGGAGTACAACTTCCGGCACCTCTTCGACGGTTACGCGACGGTGGTGAAGCTGGGTTTCGAGAAGGGCCGGTTAGTGGCGGGGCACCGGCAAATCGAGTCGGAGGCGTACCGAGCGGCGAAGAAGAACCAGAAGGTATGTTACCGCGAGTTTTCGGAAGTGCCTAAGGCGGCGAACTTCTTAGCCTACGTGGGGGAACTGGCGAGCCTGTTCTCCGGCGCGTCGCTGACGGACAACGCGAACACCGGGGTGGTGAAGCTCGGCGACGGGAGGGTGGTGTGCCTGACGGAGACTCAGAAGGGGTCCATAGTGATAGAGCCGGAGACGTTGGAAACAGTGGGGAAGTTTGAGTACAGCGACTCGTTGGGGGGGCTCCTTCACTCTGCGCACCCCGTTGTGACGGATGAGGAGTTCTTGACGTTGCTGCCTGATTTGGTGAAAGCAGGGTACCTTGTGGTCAGGATGGCGCCTGGCACCAATGAGAGGAGGGTCATTGGCCGGGTCAATTGTCGGGGCGGGCCTGCACCCGGCTGGGTTCACTCTTTTCCCGTCACTCAACATTATGTTCTTGTGCCTGAAATGCCCTTGAGGTACTGTGCTCACAATTTGCTCAGGGCTGAGCCCACTCCCTTGTACAAGTTTGAGTGGCACCCTCGCTCCAAAGCCTTTATGCATGTCATGTGCAAGACTAGTGGAAACATTGTGGCAAGTGTGGAAGTGCCTCTGTTTGTGACTTTCCATTTCATAAATGCGTATGAGGAGCAAGATGAACATGGGAGGGTGACGGCGATTATTGCCGACTGTTGTGAGCACAATTCGGATACTACCATTCTTGATAGGCTTAGGTTGCAGAACCTTCGCTCCTTTAATGGCGAAGATGTTCTACCTGATGCTAGGGTTGGTAGGTTCAGGATACCACTGGATGGAAGTCCATATGGAACATTAGAGGCAGCATTGGACCCGAATGAACATGGGAGAGGCATGGACATGTGCAGCATAAACCCTAATTATTTAGGGAAGAAATACAGATATGCCTATGCCTGTGGAGCACAGAGACCTTGTAACTTTCCCAACACCCTCACCAAGcttgattttgaattaaaaaaggcTAAGAACTGGCATGAAGAAGGTGCTGTGCCCTCAGAACCCTTCTTCGTGGCACGACCAGGAGCAACAGAGGAAGATGATGGCGTGGTAATCTCCATAATCAGTGAGAAAAATGGGGAAGGATATGCGTTGCTGTTAGATGGTTCCACTTTTGAAGAGATAGCTAGGGCCAAGTTCCCTTATGGACTTCCATATGGGTTGCATGGATGCTGGGTTCCAAAAGAATAA 1674 0.5161 MAFTALPSVRNSISWPTMLVPDMSDNISLRNKGIYKGQRNLRDLTVANVASPLPAIAPPTSEERLATTGRRQHHVAWTSITQERWEGELHVQGQIPLWLKGTYLRNGPGMWHIGEYNFRHLFDGYATVVKLGFEKGRLVAGHRQIESEAYRAAKKNQKVCYREFSEVPKAANFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIEPETLETVGKFEYSDSLGGLLHSAHPVVTDEEFLTLLPDLVKAGYLVVRMAPGTNERRVIGRVNCRGGPAPGWVHSFPVTQHYVLVPEMPLRYCAHNLLRAEPTPLYKFEWHPRSKAFMHVMCKTSGNIVASVEVPLFVTFHFINAYEEQDEHGRVTAIIADCCEHNSDTTILDRLRLQNLRSFNGEDVLPDARVGRFRIPLDGSPYGTLEAALDPNEHGRGMDMCSINPNYLGKKYRYAYACGAQRPCNFPNTLTKLDFELKKAKNWHEEGAVPSEPFFVARPGATEEDDGVVISIISEKNGEGYALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKE 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3277 557 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 15 556 - -
Ssu1g3277 557 Pfam Retinal pigment epithelial membrane protein 80 555 IPR004294 GO:0016702
Ssu1g3277 557 PANTHER BETA-CAROTENE DIOXYGENASE 15 556 IPR004294 GO:0016702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3277 K17913 - gmx:100814148 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3277 1 85190622 85193807 Ssu1g3277 1 85190622 85193807 ECH