Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3274 ATGCAGGTTCTTCGTAGTGCTGTCATGTCTCTTGCAAATAGGTCGTATGACGAGTCTTATGTTGATTCGTGCCACTGGGCGGATGGGATTCCGCTGAATCTGCGGCTGTATGAAATGCTTCTGCAATCCTGCTTTGATGCTAATGATGAGTCTTCGATTATTGAGGAATTCGATGAGCTGATGGAGCAAATCAAGAAGACCTGGGGAATCCTTGGGTTGAACCAGACGCTGCATAATCTCTGTTTCACTTGGGTTTTGTTTCACCGGTTTGTTGTGACTGGCCAGGTGGATTTGGACCTGCTGTCTGCCACGGATGGCCAGCTGGCAGAAGTTGCAAAAGATGTGAAGACAACAAAAGATGCAGAATATTCTAAAGTTTTGAGTTCCACGTTGACTTCAATATTGGGGTGGGCTGAGAAAAGGCTCCTTGCTTATCACGAAACTTTTGACCGTGGAAATGTTGAAACCATGCAGGGCATTGTCTCTTTAGGGGTAGCAGTAGCTAAGATTTTGGTTGAGGATATATCCAATGAGTATCGCCGGAGGAGAAGAAATGAAGTCAATGTGGTACGTGAAAGAATTGAAACTTACATCAGGTCATCACTACGTACTGCTTTTGCCCAGATAATGGAGAAAGCAGACTCAAGCAGGAGAGCATGCAAAAATCAGCCAAATGCTCTCCCTGTCCTTGCCATCCTTGCAAAGGATGTAGGTAGCGTGGCAGTCAATGAAAAGCAAGTGTTCAGTCCAATACTTAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCAACCCTTCATGCATGCTATGGAAATGAATTGAAGCAATTCATATCGGGTATCACAGAATTGACACCTGATGCTGTTCAAGTCTTGAGAGCTGCAGATCAGTTGGAGAAAGACCTTGTGCAGATAGCAGTTGAGGATTCAGTGGAAAGTGATGATGGTGGTAAAGCAATTATCCGTGAGATGCCTCCTTATGAGGCTGAAGGTGCAATTGCCAATCTTGTGAAAATATGGATTAAGACTAGAATAGACAGACTGAAGGAATGGGTCGATAGAAATCTGCAGCAAGAGCTTTGGAGTGCTCAAGCAAATCAGGAAGGGTATGCCCCATCTGCTGTTGAAGTTCTGCGAATAATAAATGAAACTTTGGATGCTTTCTTTCAGCTTCCAATACCGATGCATCCTGCATTGCTTCCGGAAGTAATGAATGGCCTTGACAGATGCCTTCAGTACTATGTTATCAAAGCAAAATCTGGCTGTGGATCGCGAAACACATTTGTTCCAACAATGCCAGCATTGACCAGATGCACTATTGGCTCAAAGTTTCAGGGCTTTgggaagaaaaaagataaatctccAAATTCTCAGAAGAGAAACCCGCAGGTTGCAACAAATGGGGATAGCTCTTTTGGAATACCACAACTCTGTGTTCGTATAAATACTTTGCAATGGATCCTGGGTGAATTTGATGTTCtggaaaaaagaataataaccCTTCTACGGAACTCTGAATCTGCTCATGAAGAAGATTTTTCAAATGGATTAGCAAAGAAGTTTGAACTAGCTCCAGCAGCATGTCTGGAAGGAATTCAGCAACTCTGTGAGGCTGCAGCATATAGAATTGTCTTCCATGATCTAAGCCATGTTTTATGGGATGGTTTATATGTCGGGGATCCAGCATCCTCGAGGATTGAGCCATTTCTTCAGGAACTTGAGCGGAAGTTAATGTTCATTTCAGATACTGTTCATGAGAGAATTCGCACACGTATTATTACTGAAATAATGAGAGCTTCCTTTGATGGATTCTTGCTTGTATTGCTTGCTGGTGGTCCTTCACGTGCTTTTACCCGGAAAGACTCTCAGATCATAGAGGatgatttcaaatttctcaAGGAGTTGTTTTGGGCAAATGGGGATGGCTTGCCTTCTGAATTAATAGATAAGTTTTCAACTACCGCAAGGTCTATCCTTCCCCTTTTCAGAACTGACACAGAGAGCCTCATTGAGCAGTTTAGACGGGTGACCATGGAGTCATATAAATCCTCTGCCAGGTCTAAACTTCCATTACCTCCAACTTCTGGACAGTGGAATCCATCAGAACCAAACACATTATTACGTGCTTTATGCCATAGAAATGATGAATCAGCTTCTAAGTTTCTGAAAAAGACATATGATCTACCTAAGAAGCTTTAA 2202 0.4214 MQVLRSAVMSLANRSYDESYVDSCHWADGIPLNLRLYEMLLQSCFDANDESSIIEEFDELMEQIKKTWGILGLNQTLHNLCFTWVLFHRFVVTGQVDLDLLSATDGQLAEVAKDVKTTKDAEYSKVLSSTLTSILGWAEKRLLAYHETFDRGNVETMQGIVSLGVAVAKILVEDISNEYRRRRRNEVNVVRERIETYIRSSLRTAFAQIMEKADSSRRACKNQPNALPVLAILAKDVGSVAVNEKQVFSPILKRWHPLAAGLAVATLHACYGNELKQFISGITELTPDAVQVLRAADQLEKDLVQIAVEDSVESDDGGKAIIREMPPYEAEGAIANLVKIWIKTRIDRLKEWVDRNLQQELWSAQANQEGYAPSAVEVLRIINETLDAFFQLPIPMHPALLPEVMNGLDRCLQYYVIKAKSGCGSRNTFVPTMPALTRCTIGSKFQGFGKKKDKSPNSQKRNPQVATNGDSSFGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAHEEDFSNGLAKKFELAPAACLEGIQQLCEAAAYRIVFHDLSHVLWDGLYVGDPASSRIEPFLQELERKLMFISDTVHERIRTRIITEIMRASFDGFLLVLLAGGPSRAFTRKDSQIIEDDFKFLKELFWANGDGLPSELIDKFSTTARSILPLFRTDTESLIEQFRRVTMESYKSSARSKLPLPPTSGQWNPSEPNTLLRALCHRNDESASKFLKKTYDLPKKL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3274 733 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 290 433 IPR014770 -
Ssu1g3274 733 PANTHER ELONGATION FACTOR TS (DUF810) 1 733 - -
Ssu1g3274 733 MobiDBLite consensus disorder prediction 447 469 - -
Ssu1g3274 733 PANTHER PROTEIN UNC-13 HOMOLOG 1 733 IPR008528 -
Ssu1g3274 733 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 564 674 IPR014772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3274 Ssu-Chr1 85146253 85149370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3274 - - gmx:100814675 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3274 1 85146253 85149370 Ssu1g3274 1 85146253 85149370 ECH