Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3273 ATGGAAGACGCCGGGAAATCTCTGAACTCCGGGAACCTATCGCGTAAGGTGGTTGACGTGGCTGCGGGCGAAGCACACACTCTTCTTCTCACTGGGGATGGCAGTGTGTACTGTTGGGGTAAGGGAATGTTTGGACGGCTTGGGACTGGCTCAGAAAAAGACGAACTTTTTCCAGCACAACTCAACTTTGGAAACCcaaatccaaatccaaatcCAAATGGAACACAAGACACTGTCAAAATAGTGGGAATTGCTGCTGGTGCTTATCATACTCTCGCTCTTGCAGAGGAATCACATGACAATGAATATGCTGTTGGAGACTATTCTCTAGTGCCCCGCTTACTGAACAAGTTTCTTGAATTGCTCTCCCCTGATTCTTCATCGGGTGTGTCTGAAGCAGAAGGCAAAACATCACTTAAGATATGTGCTGTCAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAATCGTGGGACCCTGTGGATGTGGGGAAACTGCCCTCAACAAAGCAATGAAGGTGGGTTATCACTTGTAAGCACTTTCACTCCAACACCAGTTTGGGATTTTCAGGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTGGCACTGGTTAGTGCTGGTGAATCAGATAACGGTGAAGATCTAGTGTGCTACTCTTGGGGTTATAACAGCCACGGCCAATTAGGCTTGGGGGATAAGGAGAGCAGGCTGCATCCAGAAGTTGTTAAAACATTTGATGAGGAGTCCCCTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAAAAGAAATCTAGTGACACATTAGAAAGCACATGTTGGACCTTTGGCCTCGGGGATAATGGCCAGCTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACAAAACGTATATCTTATTTGTCTTGACTGTGGTTTGTTTCATACAAGTGTTGTTTCCTCAGCTGGGGATGTGTGGTCATGGGGAATGGAGAAGGGCCTTGGCTTATGCCCTGATGCTAGCCGTGCTGAAACAGATTCTGGCGATGCCCTCTCTCCCCTTGTTATGTCATGCAAGCCATATCAACCTAAATTTCCAGATCCAGTTAAAGTTGTATGCGGGGCTGCACATACTGTTATTGTTGCGCAAGAGGGATACAGAATGTGGTCTTGGGGTAGGGGAAGGGGTGGAGTTCTTGGAAATGGTAAAGGAGTAGACTGTTACACTCCCACGGTTGTGCTATGGCCTACAATGATGGAGGATTTTGAGGAAGAGGAAGTAAAAGGCTCTGGTGAGCAAGATAAGGTGAGAGAAAAGGAGACTGAAGTAATAACAGAAACAGAAGAGAGATTATCATCAGCATTGAATGAGCTGAAGCTACTACAAACAAAGCTATCTATAATGGAAAAATATGCTAGCATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAGCAAGATATCCCTGTTTCATTGCGGAATTCAGATACCTTTGACATTGCAAAAGAATGGGAGAAGATGTTAGAGGCAGCAGATCATACGAAGCTAATTAGGTTGGAAATGTTTTACCGTGACATGCTTGCGGGAGTGAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGCCTCCAATCTTCAGAGGTGAAAATTTAG 1695 0.4437 MEDAGKSLNSGNLSRKVVDVAAGEAHTLLLTGDGSVYCWGKGMFGRLGTGSEKDELFPAQLNFGNPNPNPNPNGTQDTVKIVGIAAGAYHTLALAEESHDNEYAVGDYSLVPRLLNKFLELLSPDSSSGVSEAEGKTSLKICAVKAGGMMSLAIDNRGTLWMWGNCPQQSNEGGLSLVSTFTPTPVWDFQGHTVVKVACGNEHVVALVSAGESDNGEDLVCYSWGYNSHGQLGLGDKESRLHPEVVKTFDEESPYEVACGAFHTALLTHKKKSSDTLESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVYLICLDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASRAETDSGDALSPLVMSCKPYQPKFPDPVKVVCGAAHTVIVAQEGYRMWSWGRGRGGVLGNGKGVDCYTPTVVLWPTMMEDFEEEEVKGSGEQDKVREKETEVITETEERLSSALNELKLLQTKLSIMEKYASILHGSIFGKPFDEQDIPVSLRNSDTFDIAKEWEKMLEAADHTKLIRLEMFYRDMLAGVKDELMKRRIKEIVKECLQSSEVKI 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3273 564 Gene3D - 354 437 IPR009091 -
Ssu1g3273 564 Coils Coil 446 473 - -
Ssu1g3273 564 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 563 - -
Ssu1g3273 564 SUPERFAMILY RCC1/BLIP-II 15 97 IPR009091 -
Ssu1g3273 564 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 97 IPR000408 -
Ssu1g3273 564 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 257 267 IPR000408 -
Ssu1g3273 564 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 158 210 IPR000408 -
Ssu1g3273 564 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 279 331 IPR000408 -
Ssu1g3273 564 Gene3D - 218 353 IPR009091 -
Ssu1g3273 564 Gene3D - 6 217 IPR009091 -
Ssu1g3273 564 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 393 IPR000408 -
Ssu1g3273 564 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 563 - -
Ssu1g3273 564 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 219 270 IPR000408 -
Ssu1g3273 564 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Ssu1g3273 564 PRINTS Chromosome condensation regulator RCC1 signature 390 411 IPR000408 -
Ssu1g3273 564 PRINTS Chromosome condensation regulator RCC1 signature 197 213 IPR000408 -
Ssu1g3273 564 PRINTS Chromosome condensation regulator RCC1 signature 158 174 IPR000408 -
Ssu1g3273 564 PRINTS Chromosome condensation regulator RCC1 signature 321 339 IPR000408 -
Ssu1g3273 564 Pfam Regulator of chromosome condensation (RCC1) repeat 281 327 IPR000408 -
Ssu1g3273 564 Pfam Regulator of chromosome condensation (RCC1) repeat 222 267 IPR000408 -
Ssu1g3273 564 Pfam Regulator of chromosome condensation (RCC1) repeat 33 94 IPR000408 -
Ssu1g3273 564 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 84 94 IPR000408 -
Ssu1g3273 564 SUPERFAMILY RCC1/BLIP-II 137 425 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3273 Ssu-Chr1 85141128 85144396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3273 - - gmx:100815199 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3273 1 85141128 85144396 Ssu1g3273 1 85141128 85144396 ECH