Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g3272 | ATGGACTCCGCTGCCTCCAATTCAAATTCTCCATCAAACCAtaacaaccaccaccaccaccaccctcgGTTCAAACCGAGCCAACCCATTTCAGACCGAATAGTTCGCGCCCTCCGCCACCGCCTGCGCCTCCTCCACCGTTCCGGCTCCACCTTCTTCATATTCGGTGCCACCGGAAACGTGTACACAGTGACCTTATCCTCCACACCCTCATGCACCTGCCCTGACCGTACAACCCCATGCAAGCACATCCTCTTTGTTTTCATTCGAGTTTTGGGCGTGTCCCTCGACGACGTGTGTCTTAGGAGGAGGACCCTTCGTCCCTGCCAGCTTCAACGCCTCCTCGGAACGCCGACGCTGCCGGAGGCCGTGGCCGGGGGCACCCTGCGGCAGAGGTTTCACCAGCTGTTCTTTTGTGGAGGGTCAACGAGGCCAAAGATAGAGACGGAGGAGGGTTCTACGTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAACAAAACTTGGTTGCCTGTGGGACATGCCGTAACCCCATTCATGAAGAGTGCTTGATGAGGTGGAAGAGAAGCCGGGGAAGGAGAACGGCTAGTTGTGTGATTTGTAGAGCAAGGTGGAGGGATAGGGTGGAGCAGGATAAGTATCTGAATCTCTCTGCTTATGTTAGCGAAGATGATATGGCACAACCTGCTGGGGGTCTCTGCGCTGGCTAA | 708 | 0.5367 | MDSAASNSNSPSNHNNHHHHHPRFKPSQPISDRIVRALRHRLRLLHRSGSTFFIFGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGTPTLPEAVAGGTLRQRFHQLFFCGGSTRPKIETEEGSTCPVCLEEMGKEQNLVACGTCRNPIHEECLMRWKRSRGRRTASCVICRARWRDRVEQDKYLNLSAYVSEDDMAQPAGGLCAG | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g3272 | 235 | Pfam | SWIM zinc finger | 62 | 90 | IPR007527 | GO:0008270 | |
| Ssu1g3272 | 235 | PANTHER | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 | 1 | 226 | IPR039903 | GO:0061630 | |
| Ssu1g3272 | 235 | SUPERFAMILY | RING/U-box | 146 | 207 | - | - | |
| Ssu1g3272 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 201 | IPR001841 | - | |
| Ssu1g3272 | 235 | Pfam | Ring finger domain | 154 | 201 | IPR001841 | - | |
| Ssu1g3272 | 235 | ProSiteProfiles | Zinc finger SWIM-type profile. | 62 | 92 | IPR007527 | GO:0008270 | |
| Ssu1g3272 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 218 | IPR013083 | - | |
| Ssu1g3272 | 235 | PANTHER | - | 1 | 226 | - | - | |
| Ssu1g3272 | 235 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g3272 | - | - | var:108321788 | 412.149 |
Event-related genes