Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3271 ATGTTCCCTTCAATCCTAAATTCTAATCAACCTCGGGACCAGcaacaacaaaaacaaaaggggGAATGGTTATCAGGAAGTTTCAAGCCAGAGAACTTTATTCCAGGTCTTGTTATAGGTTTCATTTTTGGGTTGTTGTTAGACTTATCGAAGCCAAGTAGAAATCACTTGTCCAAGAAAATTTTCTCATCTGGCAAACTTCAACAGCAACTCTCAGTCTCAAGCCGTGGTGATCAAGAACTTAAAATGGTTCTGGTCGTAAGGCAAGACCTAAAGATGAAATCTGGAAAGATTGCATCCCAATGTGCTCATGCTGCCACTGGCATGTATGCTGAATTAATGCAAAGTGATCGGTCTCTTTTGAGACAATGGGAACAGTGCGGCCAGCCCAAAATTGTTGTGACTTGCAGGAATCAGCAAGAAATGAATAAACTGAAGGAAACAGCTGAGAGTATTGGCCTTCCTACTTTTGTTGTTGCTGACGCTGGACGAACACAGGTTATGGCAGGATCAAAGACTGTTCTTGCTGTTGGACCTGGACCAAAATCTTCTGTGGATTCGGTGACTGGGAGATTGCCTCTGCTTTGA 588 0.415 MFPSILNSNQPRDQQQQKQKGEWLSGSFKPENFIPGLVIGFIFGLLLDLSKPSRNHLSKKIFSSGKLQQQLSVSSRGDQELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQQEMNKLKETAESIGLPTFVVADAGRTQVMAGSKTVLAVGPGPKSSVDSVTGRLPLL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3271 195 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 81 195 IPR002833 GO:0004045
Ssu1g3271 195 Gene3D Bit1 76 195 IPR023476 -
Ssu1g3271 195 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 8 195 - -
Ssu1g3271 195 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3271 195 SUPERFAMILY Peptidyl-tRNA hydrolase II 80 195 IPR023476 -
Ssu1g3271 195 Pfam Peptidyl-tRNA hydrolase PTH2 81 195 IPR002833 GO:0004045
Ssu1g3271 195 CDD PTH2 82 195 IPR002833 GO:0004045
Ssu1g3271 195 PANTHER PEPTIDYL-TRNA HYDROLASE 2 8 195 IPR002833 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3271 Ssu-Chr1 85124662 85127662 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3271 K04794 - gmx:100527852 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3271 1 85124662 85127662 Ssu1g3271 1 85124662 85127662 ECH