Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3262 ATGAAAGAGATGAAACCAAGCGCAGACACGCACTTCAATCTACCGCATGTGGCAGACATCACGTGCATGGACCCGAACCGGCCACCGCTGGTGGCGGAGAAAGTGTGCAAAACGGTGCGTTTACTGGGCTACCTCATCCAAAACGGCGTCTCGAAGAGCAAGGTGATCCACGACGTGCAGGACGTGATGAAGCGAGGGAAGAACATAGGGAAGGCGCTGAACGACGTCGTGGTTCGGCACCACCAGGCGCTGACGTGTCGCCCGCGTGACCCGCACGTCTCCTTCGTGTCGCCGCTGGTGTACCAGTTCAGCTGCAGCGGGAGTCCGCCGCGCATTTCGCATGCCGGCCGGAGGAAGCTCTCTCCGGCCGCCGCCTCGCCGCGACAGAGTCGCCGCTCGCCGGCTCACCGCGCGGTGAGGATGTGTCGCGGCGCCGGCGATGACGGAACGACAGAGAGGCGCGTGAAGATGGCGGGTTCCGCTGCTTCCATGTTGAACGACGCAGAGAAGGATTTTCATGTGGACGAGGCCGCGGAGGAGTTCATAGCGAGGTTCTATAGGGAGTTGAGGTTGCAGAAATGGCTGGATCACTATTGCTGA 600 0.6117 MKEMKPSADTHFNLPHVADITCMDPNRPPLVAEKVCKTVRLLGYLIQNGVSKSKVIHDVQDVMKRGKNIGKALNDVVVRHHQALTCRPRDPHVSFVSPLVYQFSCSGSPPRISHAGRRKLSPAAASPRQSRRSPAHRAVRMCRGAGDDGTTERRVKMAGSAASMLNDAEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3262 199 MobiDBLite consensus disorder prediction 109 152 - -
Ssu1g3262 199 PANTHER DUF761 DOMAIN PROTEIN 23 198 - -
Ssu1g3262 199 Pfam Cotton fibre expressed protein 173 193 IPR008480 -
Ssu1g3262 199 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 23 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3262 Ssu-Chr1 84892101 84892700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3262 - - gmx:102666753 312.383