Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3256 ATGGACGAcgatgagagagagagattgcaAATCCAGGTGATTCGCCAGCTCGATCTCGAGGACCTCGAAGTCGAAGAAGTCGATCACTCCGATGACGATGATGACGACTACGCCGACGAGGCGTATGCGCTTTTCCTTTCACAATTGAATTCACATAGTCCTCCTCACTCATCCGCTGAATTCACTTTCGATACCTATATCACGCCTCTGCATACGTATCTCGGTGATGTCGAAGACACGCGCCACAGGACTGCTTTCTTGGACGGTGGTGCTGTATTGAACATTCCACTGTTTTGTCTACAAGGAGTTGTACTCTTTCCTGGGGCTACTCTTCCCCTTAGAGTTATTGAACCTCGTTTGGTGGCTGCTGTTGAGAGAGCTTTGACTCAAGAAGATATTCCTTATACCATTGGTGTGATTCGAATTCACAGGGATACCACAAGTCAGAGGATAAAATCAGCAAGCGTTGGGACAACTGCAGAGATTCGACAATATGGGCGTCTGGGAGATGGTTCACTAAATGTGGTTACCCGTGGACAACAACGATTTCGCCTAAGACGGTCCTGGAATGATGTGGAAGGAGTGGCTGATGAATCCCTCGTTCTTTGTTTGGTTGGGGTGCCTCATTTTAGCCTTGTGGAGAGATTCAAATTATTGAGGAAGATCTGCCACAGAGACCTCCGAGGGATGCTTTTGGCCAAATTAGCACCATTGAGTAATATGCCCTGTAGCCAAGCTGTCTCACACACATCTCCAAAGTATTCTCATGTTAAAATGCAAAGGTCAAAAAATGAGGAAAGTGATTCAGAACCAAATTCAGAAGAGAGTTTTGAGGGTGAGCTCTCACTAATGGAAAGGAAAATCCATCTATCAGTTGTTGGCTCCAGTTATGTGGATGATACGACGGATGAATCAGCAAACGGCAGTGATGTTAAATTCATGCATAAGTCAGATCAGGAAATTAGATCCAATCTGGATTCAAGAACTGGGAACTGCTCCACTTCCGGAAAGCAGTCAACAAAAGAAGAGCTTGATAGATGTAAAAATATCTGTGCCTACCCatctcaaaaaatatcaaaagcatTCTGGCCCCACTGGGCATATCGGATGTTTGACTCTTATTGGCTTGCACAAAGGGCTGCAGATATGTGGAAGCGAATAGTTGGGGTGCCTAACATGGATAGTCTCATTAAGACGCCTGAtgttttatcatttcacatcGCCAGTAAAATACCTGTGTCTGAGTCTACAAGGCAGGAGCTTTTGGATATTGATGGCATTGCATATAGGTTGCGTAGGGAAATTGAATTACTAGAGAGCATTGATCTTATCCGATGTAAAAGCTGCCAGACTATAATTGCAAAACGAAGTGATATGTTGGTGATGTCAAGTGAGGGTCCTCTTAGTGCATATGTGAATCCAGGTGGTTATGTGCATGAGATAATGACTCTTTACAAGGCAAATGGTTTATCTCTCATTGGGCCAACAGTAGCAGAATACAGTTGGTTTCCTGGGTATGCGTGGACAATTGCTACTTGTGCAACATGTAAAACCCAAATGGGATGGCTTTTTACAGCCAGGAACAAAAAACTGAAACCCAGCTCTTTCTGGGGGATTCGGAGCTGTCAACTTGCAGAAGAAATGCGTCGAAACCTTTAA 1659 0.4304 MDDDERERLQIQVIRQLDLEDLEVEEVDHSDDDDDDYADEAYALFLSQLNSHSPPHSSAEFTFDTYITPLHTYLGDVEDTRHRTAFLDGGAVLNIPLFCLQGVVLFPGATLPLRVIEPRLVAAVERALTQEDIPYTIGVIRIHRDTTSQRIKSASVGTTAEIRQYGRLGDGSLNVVTRGQQRFRLRRSWNDVEGVADESLVLCLVGVPHFSLVERFKLLRKICHRDLRGMLLAKLAPLSNMPCSQAVSHTSPKYSHVKMQRSKNEESDSEPNSEESFEGELSLMERKIHLSVVGSSYVDDTTDESANGSDVKFMHKSDQEIRSNLDSRTGNCSTSGKQSTKEELDRCKNICAYPSQKISKAFWPHWAYRMFDSYWLAQRAADMWKRIVGVPNMDSLIKTPDVLSFHIASKIPVSESTRQELLDIDGIAYRLRREIELLESIDLIRCKSCQTIIAKRSDMLVMSSEGPLSAYVNPGGYVHEIMTLYKANGLSLIGPTVAEYSWFPGYAWTIATCATCKTQMGWLFTARNKKLKPSSFWGIRSCQLAEEMRRNL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3256 552 ProSiteProfiles CULT domain profile. 441 548 IPR034750 -
Ssu1g3256 552 MobiDBLite consensus disorder prediction 242 278 - -
Ssu1g3256 552 Gene3D Peptide methionine sulfoxide reductase. 437 551 - -
Ssu1g3256 552 SUPERFAMILY PUA domain-like 94 194 IPR015947 -
Ssu1g3256 552 SMART lon_5 94 440 IPR003111 -
Ssu1g3256 552 Gene3D - 75 198 IPR046336 -
Ssu1g3256 552 CDD CRBN_C_like 444 540 IPR034750 -
Ssu1g3256 552 Gene3D - 372 436 - -
Ssu1g3256 552 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 444 534 IPR004910 -
Ssu1g3256 552 SUPERFAMILY PUA domain-like 372 439 IPR015947 -
Ssu1g3256 552 ProSiteProfiles Lon N-terminal domain profile. 95 440 IPR003111 -
Ssu1g3256 552 PANTHER CEREBLON 4 544 - -
Ssu1g3256 552 PANTHER PROTEIN CEREBLON 4 544 - -
Ssu1g3256 552 MobiDBLite consensus disorder prediction 242 257 - -
Ssu1g3256 552 Pfam ATP-dependent protease La (LON) substrate-binding domain 94 439 IPR003111 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3256 K11793 - gmx:100779918 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3256 1 84804750 84810008 Ssu1g3256 1 84804750 84810008 ECH