Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3255 ATGAGCGTTTCTCATTTCGCGGTTCTGTCGTCTTGTCGTCCACGCTTCGCCCCTTCGCTGTACTGTACACGCACACTCTCTCTCTACTTTATCTCCTCGTTGTTGTTCTTCCCGCTTAGGTCTTGTGATTTTAATTGCAAGTTGCAACCCACCAGCAGGTCGTGTGCTTCAACCCTTCTTCGTTCTCGCATCCAGTGTTGTTCCACTCTCTCCGCTACTTCTACAGAGACTCCCACTCTAGCCTCTATTAAGAAACGAGTAGTGTCGGGAGTTCAACCCACGGGCTCAATTCACCTTGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCGATCACATTACCTTATGACACCCCACAATTATCAAAGGCTACAAGGTCAACTGCTGCTGTTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTAACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAACATTTAGAGTTGACCCGTGACTTGGCTGAACGggttaataatttatatggaGGAAGAAAGTGGAAGAAATTAGGGGGCCGAGGTGGTGCTATATTTAAGGTTCCAGAGCCCCTTATAGCTCCAGCTGGAGCACGGATAATGTCCCTAACTGATGGCCGTTCcaagATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATcttaTAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAGGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAGCAATCTTCTTTCCATATACCAGATTATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCATATTCAAAGCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTGGATGAAGTTTTGGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATACCACACTTCATAGTGTTTACCAAGCAATGGGATTTTTGAGGAGACAGTGA 1281 0.4325 MSVSHFAVLSSCRPRFAPSLYCTRTLSLYFISSLLFFPLRSCDFNCKLQPTSRSCASTLLRSRIQCCSTLSATSTETPTLASIKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTPQLSKATRSTAAVYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGAIFKVPEPLIAPAGARIMSLTDGRSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECSNLLSIYQIISGKTKEEVVQECQNMNWGIFKALLTDALIDHLHPIQVRYEEIMSDSGYLDEVLAQGARNAADIADTTLHSVYQAMGFLRRQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3255 426 TIGRFAM trpS: tryptophan--tRNA ligase 84 422 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu1g3255 426 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 93 102 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu1g3255 426 Gene3D HUPs 87 421 IPR014729 -
Ssu1g3255 426 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 57 422 - -
Ssu1g3255 426 CDD TrpRS_core 86 374 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu1g3255 426 PANTHER BNAA04G15180D PROTEIN 57 422 - -
Ssu1g3255 426 Hamap Tryptophan--tRNA ligase [trpS]. 84 423 IPR024109 GO:0004830
Ssu1g3255 426 SUPERFAMILY Nucleotidylyl transferase 85 422 - -
Ssu1g3255 426 Pfam tRNA synthetases class I (W and Y) 86 377 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu1g3255 426 PRINTS Tryptophanyl-tRNA synthetase signature 147 166 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu1g3255 426 PRINTS Tryptophanyl-tRNA synthetase signature 97 113 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu1g3255 426 PRINTS Tryptophanyl-tRNA synthetase signature 224 245 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu1g3255 426 PRINTS Tryptophanyl-tRNA synthetase signature 289 299 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Ssu1g3255 426 Gene3D - 282 392 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3255 K01867 - gmx:100780447 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3255 1 84778683 84795052 Ssu1g3255 1 84778683 84795052 ECH