Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3251 ATGGTGGTTTCCGATAGTCCCAGCGGTGGCTCCACGCCACCTCAACAGGAACAAGCCAACAAGTACGGATTCACGAAGCCCCTCTCTCTCGCGGGTCCCACCGACGCTGATCTCCAGCGTAACAGCGAATTGGATAAGTTCTTGCTCGATTCGGGGCTCTACGAGAGTAATGAAGAAGCCGCGGCGAGAAAAGAGGTTCTTCACCGCCTTGATCAGATTGTGAAAATCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGCTCTTACCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCATGACATCCTGGCCGAAATGGAAGAAGTTACTGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCATGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATCTCACATGGTTCAGTGCTATATGATATCGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAgCACTTCCGAACTACACTGAGGTGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGCGGTGTAAATTGGGCCATTTTAGTTGCTCGAATTTGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAACCCCCGGGACAGGTTTCACACTATGCCAATAATTACTCCCGCATACCCTTGCATGAATTCAAGCTACAATGTCTCGGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCTGTGGCAATAAGATTTGTGATGAAATTGAGCTCAATAAAGCCCAGTGGAGTGCACTTTTTCAGCCTTATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGATATAATTGCATCAGATGCTGATGATTTACTAGCGTGGAAGGGCTGGGTAGAATCTCGGTTGAGATTGCTTACCCTGAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGTCATCCTGACCCACATGAGTATATCAACACATCCAAGCCTTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTACATGTACTGGAAGCCAGGGATGgaaatttttgtttctcatgTTCGTCGAAAGCAACTCCCTGCATTTGTTTTTCCTGACGGTTACAAACGCACTCGAATGCCAAGGCATATAAACCATCCAGCTGAAAAAACAGGCGATGATGCCACAAAGTCCTACTCTGGGTCTGGGTCATCTGAAAGATGCATCAAGAGAAAAAATTACCCTGAAATGGTGGATAGGAAGCCAGACAAGCCAGATAAGCGGGCATCTATCAGCCCACAGAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAGCTCAAATGAGTACTGAGTGTATCGAAGGGGTTAGGTTAGCTGGTTCAACAACCAAGGATGCTAACAGCAATTGTGAAATTAAGTCATCTGATGCACTCCTAGGAAGTGGACTAAgtactgaggtagctgacaTGCAGATTAGTGAACCAGGCTTTATTGACTCCACACATGATATGTTGAAATCAAGGAGTATAGAAGTTCCAAATGAGAGTGGAGTCTTCAATGGGGACAAAGCTCAGGATCTGGCTTTAGATTGCTTGGAAAGTGCAGAAACTGATATGGATCAGCGACTAGACAAAGCATGTAATTTCATCACAAGGGCTGAATGTTCAGATTGTATACCAAATGCCAGCTCCCAGAACCTCAATTGTGAGCCAGATGTCAGACTCAGAAGTGTTGTATAA 2130 0.4338 MVVSDSPSGGSTPPQQEQANKYGFTKPLSLAGPTDADLQRNSELDKFLLDSGLYESNEEAAARKEVLHRLDQIVKIWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHDILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYACISLLVVPEDLDISHGSVLYDIDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRCGNKICDEIELNKAQWSALFQPYVFFEAYKNYLQVDIIASDADDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPDPHEYINTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYMYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHINHPAEKTGDDATKSYSGSGSSERCIKRKNYPEMVDRKPDKPDKRASISPQRLECVSPESCTSKSGGTAQMSTECIEGVRLAGSTTKDANSNCEIKSSDALLGSGLSTEVADMQISEPGFIDSTHDMLKSRSIEVPNESGVFNGDKAQDLALDCLESAETDMDQRLDKACNFITRAECSDCIPNASSQNLNCEPDVRLRSVV 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3251 709 Gene3D Poly(A) polymerase predicted RNA binding domain 369 485 - -
Ssu1g3251 709 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0004652|GO:0043631
Ssu1g3251 709 CDD NT_PAP_TUTase 62 217 - -
Ssu1g3251 709 Pfam Poly(A) polymerase predicted RNA binding domain 430 502 IPR007010 GO:0003723|GO:0043631
Ssu1g3251 709 Pfam Poly(A) polymerase predicted RNA binding domain 370 425 IPR007010 GO:0003723|GO:0043631
Ssu1g3251 709 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Ssu1g3251 709 Gene3D - 23 365 - -
Ssu1g3251 709 PANTHER POLY A POLYMERASE 2 570 - -
Ssu1g3251 709 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 495 IPR011068 GO:0003723|GO:0016779|GO:0031123
Ssu1g3251 709 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g3251 709 MobiDBLite consensus disorder prediction 504 559 - -
Ssu1g3251 709 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Ssu1g3251 709 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g3251 709 MobiDBLite consensus disorder prediction 533 555 - -
Ssu1g3251 709 SUPERFAMILY Nucleotidyltransferase 20 216 IPR043519 -
Ssu1g3251 709 Pfam Nucleotidyltransferase domain 96 173 IPR002934 GO:0016779
Ssu1g3251 709 PANTHER NUCLEAR POLY(A) POLYMERASE 4 2 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3251 Ssu-Chr1 84680487 84685482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3251 K14376 - gmx:100802620 1325.07