Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3247 ATGTTCTCAATTGCAGCTATCAATGATACTGACTCGAAAAGTGAGTGGGAACCACTAGCTCCCACGAAAGAAGCCCAGGAATTTCATCTTTCTCAAACTTACCATGAAGGGCTTCTCAAGTTACAAGCAAAAGAGTATGAGAAGGCTCGCGAGCTCTTAGAATCTGTGCTTAAAGATCCTCTTATTGCTAATGCTCAGGTGGATGGCAGTGCTAGTGATGGTCATCTATTGCAACTCAGATTTTTGGCATTGAAAAACCTTGCCGCTGTTTTTCTTCAGCAAGGTTCTACACATTATGAAAATGCTCTACGCTGTTATCTTCAAGCTGTGGAGATCGATTCTAAAGATTCTGTTGTCTGGAACCAGCTGGGAACATTGTCATGCTCAATGGGCTCACTGAGTATTGCACGTTGGGCATTTGAGCAAGGCCTCTTGTGTAGCCCTAATAACTGGAATTGCATGGAGAAGCTTTTGGAAGTTCTTATTGCAATTGGCGATGAGGTTGCTTGCCTTTCTGTCACTGAGTTGATTTTGAGGCACTGGCCATCACATTCTCGCGCTTTGCAGGTTAAAAATACCATTGAAGAATCAGAACCTTTGCCATTTGCTCCAAGAGGCATAGACAAATTGGAACCTAAACATGTGCGGCTCAAATTTCCCGACAAGAGAAAAGCTACTAATGAGAATGTAGATGAGGATATTGCTTTCAAAAAGCTGAACCAGAATAAAGAACTACACCTGACAGAAATTTCCTGGGTGGCTATTGCTGATGCACTTTTGGAAATTTTATCCCCACAAAGTTCCAAGATGGATCCTGAAAAAGCATTCAGTTCTCCTGATATTAGGCTAAGCATAATCTTACCTCGTAGCTCAGAAGCTGTTATGAACACTGTAGAAATGAAAGGGTCCAATGGTGAAAATAGTGTTTTTGGCGACAGTAACATAGAACGATCAAGTTcttttaaagagaaagaagCAAATATCCAAGAAGAACAACAGCATGAAAGGCGAAGTTCTCGACTTGAAAGGCTTCGGAGTCGGAAACCAGGGAAAGAAGAATCTGATTCTTCTTGTGGCAAGGACCCTGCCAAGGTTGTCATTCAATATCTAGAGCCATTTATTGCTGGTAGATTGGGGGGTCAAAATACAATAGATAGAGATGCCACGACACTATCCTGTTTAGGAAATTCTGAATATCATAATGTTTCTGCATTTTTAAGAGAAACTTCAAACAATTATGGTGCTTATCATATGGGGCACTTGCTTTTAGAAGAAGTTGCAAGACAAGGTCTCACATATCATGATGCTTTTGTCAAATTTCTGGAGTTGGAAAAGTTGACAAGGCATTGGGGAAAGGAGAGAACTGctgaatgtaatatttttcttgcTGAGCTGTATTATGACTTTGGATCATGCTCCCCCACTGGTTCTAaacaattagaatttatttctgAGACGTCTTATCATCTGTGTAAGATCATAGAATCTGTAGCTTTAGATTATCCTTTTCACTTGCCTCATGCCTTGAATGAAGGTTTTTTGATAGATAGTATCCAAGAGAACAGTGGAAAAACAATAAACACCTCCCCTGAGAGCAATTCAAATTTAGGCAGCTCACTTCTGATGAAAAACAGTTCCCTCTGGGCTCGATTCTTCTGGCTGAGTGGGAGATTGTCTATTGTTGATGGCAACAGGGCAAAAGCTTGTGAAGAATTTTGTATTGCTTTGTCACTTTTGGCAAAGAGAGAGAACACAAAAGATTCTCTAGGTTCAGTACCCCGCCCACATTGCAAGGCTGTAAAAGAGCTTAACTTTGATAGAGTTCTTGATgaagttaatatattaaagatcaATTTCTTGATGGAAAAGTCTGTCATTAAGATGATGGAACAAGAAAAGTTTTTGGAGTGTGTATCCCTACTTTCTCCGCTTCTTTTCTCCACACGGGATGCCTACCCtgattcattttctttatcCATGACagataaaaaagatgaaaagataaCTTCCACTGAACTCATGGCTGTAGATGTTCTAATAGAAGCATGCCAAAAGACAAGGCCAATGGATGTAGAGATGTATTTCAATTGTCATTATAGAAAGCTGAAAATACTTGTGGCGATGATGGGTTTGAATACATGTATTACATCATTTAAATCTTCCGATCAAGCACCTGGTTTAAGTGCATCTCCTAATTTTGATATTGATTCAAAGGAAAGTTCTAGCAAGCACTGTAATCACTTGGTTGCGGAGGAAGTGAAGGCACTCTCTGACTGTATCTCACAAGTGAAGAAAGTTATTGATCAACGTGGAGATTCTGATGGCCTTACTGTTCCAACAAGCAGCATTTGTCAAATGCAATCTTTGCTGTTGTTAATCATGAGCTATGTTGCTAACATGCTTGTCTGCAACAAAGCCTCACCACAAGTAATTTCTGATCAAGCTGAAAGCAGCTGTTTCGTTGATGCAGCCATTGTTTTCTGCAAACTCCAGCATCTTAGCCCAACCACACCTATCAAAACTCAAGTTGATTTAATTGTGGCAACACATGACTTGCTTGCTGAATATGGGCTTTGCTGTGTGGGTGAAGGTGGCAAAGGTGAGGAAGGAACATTTCTTAGATTTGCGATAAAGCATCTCTTGGCCTTGGATATGAAGGTTAAATCCAGCTTTAATCATAAAGAATCAATGCGATCTGACGAAGTGTCCAAAAACAGTCTTATCAATATGTCTGTTGAAGAATCAAAATCAGACACATTAGACATCCAGATGGATTGGAccaaaattgatgaaattaattCAGTGAAAAAGGATGTTTCTGAAGGAATAGTATCCAAAGGCATTTCATCTTGCAGAGTTCATGATAAAGACAGTAAGGAAGTAGAGTGTGAAAATCATGGAGGTGCTGGCGCTGACAGTAAGTTAATTAAGGGTGAAAATTCAAGCAATCAATTGATTGAATGTGGAAGTGAACTATCTGAAGATGAACGGGAGGAACTTGAGTCTAAAATTGACTGTGCATTAGATCAGTGCTTTTTCTGTTTATATGGATTACATCTAAGATCTGATTCATCTTATGAGGATGATCTAGTGACGCACAAAAACACAAGCCGAGGAGATTATCAAACCAAGGAACAATGTGCTGATGTTTTCAAGTATGTTCTTCCCTACGCTAAGGCATCTTCTAGGACTGGACTGGTCAAACTTCGTAGAGTTTTAAGAGCTATTAGGAAGCACTTTCTGCAGCCACCAGAGGACCTGTTGGCGGGAAACCCTATAGATAAGTTCCTAGATGATCCTAATCTATGTGAAGATAAACTCTCAGAGGAGGCTGGGTCTGATGGATTTCTTGAATCTATTACTAAGATCATGTTTCCTGATGTGGGTGGCCTTGCTCAGTATAATGCTACATTATTGAGGAGGTCTGAGCCATATTTGGAGGTCTACTGTAACTTGTATTATTTCTTGGCACTGTCTGAGGAAATGAGTGCAACAGATAAGTGGCCTGGATTTGTGCTGACCAAGGAAGGGGAAGAATTTGTAGAACAAAATGCAAAGCTCTTCAAATATGATCTCATGTACAATCCTCTGCGCTTTGAAAGCTGGCAGAAACTTGGAAATATTTATGATGAGGAAGTAGATTTGTTGCTAAATGATGGTAGCAAGCACGTTAATGTAGTAGGGTGGAGGAAGAATCCTACTTTATCTGGGAGAGTGGAAACAAGCCGAAGGAGGAGTAGACGGTGCCTACTAATGAGTTTAGCTTTGGCAAAGACATCTGCTCAGCAGTGTGAGATACATGAGTTATTGGCCTTGGTATACTACGACAGTCTTCAGAATGTAGTCCCATTTTATGATCAGAGATCTGTTTTACCCTTAAAGGATGCGGCATGGATGATGTTTTGTGAGAACTCAATGAAACATTTTAAGAAAGCCTTCACACTTAAGCAAGATTGGTTGCATGCCTTTTACTTGGGTAAACTCAGCGAAAAACTTGGATATTCACATGAAATTGTATTATCATATTACAATAAAGCTATTGCTTTGAACACATCAGCTGTTGATCCTGTCTATAGGATGCATGCCTCACgcttgaaattattatttaagtgtGGAAAGCAGAATTTGGAGATTTTGAAGGTTCTCTCAGCAAACTCCTTTAATCAATCTGTAAAAGAAGCTGTCACAAGTATCCTTGGTGGTATGGATAGctcatttttaaatacaaagGAGAAATGTATTCATGCCAATTTTGTGGAAACAAAGCATGAAGATTTGCTCAAATTGGATACAGTATGGTCTATGCTTTACAACGATTGCCTTTCTGCTCTTGAAACATGTGTAGAGGGGGATCTCAAACATTTCCATAAAGCCAGATACATGCTGGCTCAAGGACTGTACAAAAGAGGTGAGAGTGGTGATATAGAGAGGGCAAAAGATCATCTATCTTTCTGCTTCAAATCTTCACGCTCatcatttacaataaatatgtgGGAAATTGATAGCATGGTAAAAAAAGGAAGGCGCAAGACACCAGGTTCTGCTGGGAACAAAAAAGTCCTAGAGGTTAACTTACCAGAAAGTTCTCGAAAATTTATTACTTGCATTCGAAAGTATTTGCTGTTTTATCTCAAACTATTGGAGGAGACTGGAGATAGATGTATTCTTGAACGTTCGTATGTTGCTCTTCGTGCAGATAAACGGTTTTCATTATGCACTGAAGATCTTATACCGGTGGCTATCGGAAGGTATCTAAAGGCCCTGATTTCTACTATGTTCCATTCTCAGACTACTGCCCCTGGTTCTGTGAATAGTTCTGACAATGTGCTGGAGAGAATGTTTGCATTGTTCATGGAGCAAGGGAGCTTATGGCCAGAAATATGCAGCTTGCCTGAAATTGAAGGCTCAGATATGTCAGAGAGCATCATATATGGATATCTTCATGAATATATTGTATTATTGGAGAAAAATGGAAAACTGGAAACTCTTGAAGCAATAAATGAGAAGATTCGGAAGCGCTCTAAGAATCCAAAGTTCTCAGACAGTAATTGTGCAAAAGTTGGAAGGCATGCTTCTGCCGCTTGGTGCCGATCTCTTGTATATAATTTGGCACAAATAACTCCATTATCATGTGGATTCTCAAATGGGATTCAGGTCCTTAATTTGACTGATGGTGGGATGGATAATAGCCAGTTGCTCTGTATTGATTTGCAGCCAAATGAATTATGGAGTACTACTTTTGAAGATCCAACTCATTTGGAAAAGATTGAAGCAAAATGGAGCGCcattttagcaaaaataaaaaatataataatcaagaAAGCTTCTGATGAAAATTTGGAAACTGCAAACACTTTGCTCAGAGCTTGCTATAATTTTTACCGGGAGAGTTCTTCTGTAGTGCTCACCTCAGGACTCAACTTTTATTTGATTCCATCTCAATTGGTAACACAGACACCATTCAACCCAAGTACGGCTGGGATTGAAGCACTTGATCTGAGCATACCAAGGAAGCTTCTCTTGTGGGCCTATGTGCTATCGCATGGACGTTGTGCAAATATCTCACTTGTTGTAAAGCATTGTGAAGAAATTTCGAAGCTGACCATTAATCCTTACGGTTCTGCTATGCAGTCAAAGATGAAAAGAGGAAGTGGAACGTCACCTGCGCTTTCAAACTCATCTCCTGCACCTAGTCTTCCAGGTAGCGGTAAAAACGGACCAAATTCTGCCGGAGGCATTGACGTTGATTCTACCCACGTCACAACAGTGGGGTGCAGTTCATTTTCTAGCAGCAATGCCACAAATTTTGTGAATTCACTTCCCTCCGATGACATTCAGAAGAATCTCTTTGCTTCTCCCCAGTTGCATCAATGCACCCCTAACGATGCAGAAAGAAGCAATTTGATAGCACATGAAGGAGATACACAGGGAGATTGA 5937 0.3899 MFSIAAINDTDSKSEWEPLAPTKEAQEFHLSQTYHEGLLKLQAKEYEKARELLESVLKDPLIANAQVDGSASDGHLLQLRFLALKNLAAVFLQQGSTHYENALRCYLQAVEIDSKDSVVWNQLGTLSCSMGSLSIARWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVTELILRHWPSHSRALQVKNTIEESEPLPFAPRGIDKLEPKHVRLKFPDKRKATNENVDEDIAFKKLNQNKELHLTEISWVAIADALLEILSPQSSKMDPEKAFSSPDIRLSIILPRSSEAVMNTVEMKGSNGENSVFGDSNIERSSSFKEKEANIQEEQQHERRSSRLERLRSRKPGKEESDSSCGKDPAKVVIQYLEPFIAGRLGGQNTIDRDATTLSCLGNSEYHNVSAFLRETSNNYGAYHMGHLLLEEVARQGLTYHDAFVKFLELEKLTRHWGKERTAECNIFLAELYYDFGSCSPTGSKQLEFISETSYHLCKIIESVALDYPFHLPHALNEGFLIDSIQENSGKTINTSPESNSNLGSSLLMKNSSLWARFFWLSGRLSIVDGNRAKACEEFCIALSLLAKRENTKDSLGSVPRPHCKAVKELNFDRVLDEVNILKINFLMEKSVIKMMEQEKFLECVSLLSPLLFSTRDAYPDSFSLSMTDKKDEKITSTELMAVDVLIEACQKTRPMDVEMYFNCHYRKLKILVAMMGLNTCITSFKSSDQAPGLSASPNFDIDSKESSSKHCNHLVAEEVKALSDCISQVKKVIDQRGDSDGLTVPTSSICQMQSLLLLIMSYVANMLVCNKASPQVISDQAESSCFVDAAIVFCKLQHLSPTTPIKTQVDLIVATHDLLAEYGLCCVGEGGKGEEGTFLRFAIKHLLALDMKVKSSFNHKESMRSDEVSKNSLINMSVEESKSDTLDIQMDWTKIDEINSVKKDVSEGIVSKGISSCRVHDKDSKEVECENHGGAGADSKLIKGENSSNQLIECGSELSEDEREELESKIDCALDQCFFCLYGLHLRSDSSYEDDLVTHKNTSRGDYQTKEQCADVFKYVLPYAKASSRTGLVKLRRVLRAIRKHFLQPPEDLLAGNPIDKFLDDPNLCEDKLSEEAGSDGFLESITKIMFPDVGGLAQYNATLLRRSEPYLEVYCNLYYFLALSEEMSATDKWPGFVLTKEGEEFVEQNAKLFKYDLMYNPLRFESWQKLGNIYDEEVDLLLNDGSKHVNVVGWRKNPTLSGRVETSRRRSRRCLLMSLALAKTSAQQCEIHELLALVYYDSLQNVVPFYDQRSVLPLKDAAWMMFCENSMKHFKKAFTLKQDWLHAFYLGKLSEKLGYSHEIVLSYYNKAIALNTSAVDPVYRMHASRLKLLFKCGKQNLEILKVLSANSFNQSVKEAVTSILGGMDSSFLNTKEKCIHANFVETKHEDLLKLDTVWSMLYNDCLSALETCVEGDLKHFHKARYMLAQGLYKRGESGDIERAKDHLSFCFKSSRSSFTINMWEIDSMVKKGRRKTPGSAGNKKVLEVNLPESSRKFITCIRKYLLFYLKLLEETGDRCILERSYVALRADKRFSLCTEDLIPVAIGRYLKALISTMFHSQTTAPGSVNSSDNVLERMFALFMEQGSLWPEICSLPEIEGSDMSESIIYGYLHEYIVLLEKNGKLETLEAINEKIRKRSKNPKFSDSNCAKVGRHASAAWCRSLVYNLAQITPLSCGFSNGIQVLNLTDGGMDNSQLLCIDLQPNELWSTTFEDPTHLEKIEAKWSAILAKIKNIIIKKASDENLETANTLLRACYNFYRESSSVVLTSGLNFYLIPSQLVTQTPFNPSTAGIEALDLSIPRKLLLWAYVLSHGRCANISLVVKHCEEISKLTINPYGSAMQSKMKRGSGTSPALSNSSPAPSLPGSGKNGPNSAGGIDVDSTHVTTVGCSSFSSSNATNFVNSLPSDDIQKNLFASPQLHQCTPNDAERSNLIAHEGDTQGD 1978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3247 1978 Coils Coil 990 1010 - -
Ssu1g3247 1978 SMART tpr_5 81 116 IPR019734 GO:0005515
Ssu1g3247 1978 SMART tpr_5 117 150 IPR019734 GO:0005515
Ssu1g3247 1978 Coils Coil 39 59 - -
Ssu1g3247 1978 Gene3D Tetratricopeptide repeat domain 27 199 IPR011990 GO:0005515
Ssu1g3247 1978 MobiDBLite consensus disorder prediction 320 360 - -
Ssu1g3247 1978 MobiDBLite consensus disorder prediction 320 359 - -
Ssu1g3247 1978 MobiDBLite consensus disorder prediction 1876 1915 - -
Ssu1g3247 1978 SUPERFAMILY TPR-like 33 169 IPR011990 GO:0005515
Ssu1g3247 1978 Coils Coil 1653 1673 - -
Ssu1g3247 1978 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 1 1958 IPR033053 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3247 K17613 - gmx:100783154 3519.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3247 1 84592094 84610045 Ssu1g3247 1 84592094 84610045 ECH