Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3239 ATGGATCCTTGCCCTTTCGTGAGGGTCACCGTCGGCAACCTCGCCCTCAAGATTCCCGTCGCTTCCAAACCCGCGCGCTCCGTCGTTCACCCGTCTTCGTCTCCGTGCTTCTGCAAAATCAAGCTCAAGAACTTCCCTCTGCAATCCGCCGTCGTCCCCTTCATCCCTCCCGAGAGCCACTTCCCCGACTCCCAGGTGCACCCCATGGCCGCCACCTTCACCCTCAGCAAGTCCGATCTCGACCGCCTCGCCGGAAAATCCATCTTCGCCGGGAAGCTCTCCCTCAAAATCTCGATCTACACCGGCCGGAGGGGCACCACCTGCGGCGTCAACTCCGGGAGACTCCTCGGCAGAGTGTCCGTCCCCTTAGATCTTACCGGAACGGTAGCCAAGACCACAGTGTTCCACAATGGCTGGATTACCGTCGGAAAAGACGCCAAAGGCTCCTCCGCGCAGTTCCATTTGAATGTAAAAGCTGAACCCGATCCCAGATTCGTCTTCCAGTTCGACGGCGAACCAGAATGCAGCCCCCAAGTTTTCCAGATCCAAGGCAACATTTCACAACCCGTCTTCACCTGCAAGTTCAGTTTCAGAAACACCGGCGACCGAAATCACCGTTCCAGGTCGTTACAGTCAGAGCCGGGAGGTTCTAGAAGCTGGTTAAGTTCGTTCGGGAGCGAGCGCGAGCGTCCGGGGAAGGAGCGCAAGGGATGGTCCATAACGGTTCACGATCTTTCCGGTTCGCCGGTTGCGGCGGCTTCCATGGTCACGCCTTTCGTCGCTTCGCCCGGTTCGGACCGGGTCAGCTGCTCCAACCCTGGTTCGTGGCTCATTCTTCGCCCCAGCGACGGCACCTGGAAGCCCTGGGGGAGGCTCGAGGCCTGGCGCGAGCGCGGCGGCTCCGACGGCCTCGGCTACCGCTTCGAGCTCATACCGGACACCAACGGCGGCATGAGCGCCGCCGGCATAGTGCTTGCCGAGTCCACGCTGAGCTCCAACAAAGGAGGGAAGTTCGTTATCGATTTGAGCTGCCGCGGCGCCGGAAGCAACGGCGGATCCAACGGCCGCGCCACTCCGGGGAGCGCGACGTCGCCGGCGTGCAGCCCGAGGAGCAGCGGGGACTATGGCTACGGGCTTTGGCCGTATTGTATGTACAGAGGGTTTGTGATGTCGGCGAGCGTGGAGGGTGAGGGGAGGTGCAGCAAGCCCACGGTGGAGGTGAGCGTGCCGCACGTGAATTGCACGGAGGATGCAGCGGCGTTTGTGGCGTTGGCCGCCGCCGTTGATCTGAGCGTCGATGCTTGCAGGCTTTTCTCTCAACGGCTGAGGAAGGAGCTCTGCCAGCAGCTGGATTTGCTTGGCTGA 1365 0.6161 MDPCPFVRVTVGNLALKIPVASKPARSVVHPSSSPCFCKIKLKNFPLQSAVVPFIPPESHFPDSQVHPMAATFTLSKSDLDRLAGKSIFAGKLSLKISIYTGRRGTTCGVNSGRLLGRVSVPLDLTGTVAKTTVFHNGWITVGKDAKGSSAQFHLNVKAEPDPRFVFQFDGEPECSPQVFQIQGNISQPVFTCKFSFRNTGDRNHRSRSLQSEPGGSRSWLSSFGSERERPGKERKGWSITVHDLSGSPVAAASMVTPFVASPGSDRVSCSNPGSWLILRPSDGTWKPWGRLEAWRERGGSDGLGYRFELIPDTNGGMSAAGIVLAESTLSSNKGGKFVIDLSCRGAGSNGGSNGRATPGSATSPACSPRSSGDYGYGLWPYCMYRGFVMSASVEGEGRCSKPTVEVSVPHVNCTEDAAAFVALAAAVDLSVDACRLFSQRLRKELCQQLDLLG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3239 454 MobiDBLite consensus disorder prediction 350 370 - -
Ssu1g3239 454 Pfam Protein of unknown function (DUF1005) 1 447 IPR010410 -
Ssu1g3239 454 MobiDBLite consensus disorder prediction 210 224 - -
Ssu1g3239 454 PANTHER OS08G0163500 PROTEIN 1 450 IPR010410 -
Ssu1g3239 454 PANTHER OS07G0133500 PROTEIN 1 450 - -
Ssu1g3239 454 MobiDBLite consensus disorder prediction 201 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3239 Ssu-Chr1 84476680 84478358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3239 - - gmx:100805268 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3239 1 84476680 84478358 Ssu1g3239 1 84476680 84478358 ECH