Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3236 ATGAATCCTGATCAGTTTCAGAAGAATAGCATATACGTAGAAACCCCTGAAGATTTTGGCGATGGTGGCAAAAACTTCGACGACGACGGACGAGTCAAAAGAACCGGTACGTGGGTGACTGCGAGTGCCCATATCATAACGGCGGTGATAGGGTCTGGAGTGTTGTCACTTGCATGGGCAATGGCACAAATGGGTTGGGTGGCTGGCCCTGCCGTTCTCTTTGCCTTCTCCTTCATCACATACTTCACCTCCACTCTTCTTGCGGACTGTTATCGTTCGCCTGACCCTGTTCATGGCAAGCGAAACTACACCTATTCCAACGTTGTCAGATCTGTCttagGGGGGAGGAAATTTCAGCTGTGTGGATTAGCTCAGTATATAAATCTTGTCGGTGTAACTATCGGTTACACAATAACGGCTTCAATTAGTATGGTGGCGGTGAAGAGGTCGAACTGTTTTCACAAACACGGCCATCATGATAAGTGTTATACGTCAAACAACCCTTTCATGATCCTCTTTGCCTGCATCCAAATCGTCCTAAGCCAGATACCAAATTTCCATAAGCTCTGGTGGCTCTCCATTGTTGCAGCAGTTATGTCTTTTGCTTATTCTTCCATTGGCCTCGGGCTCTCCGTAGCTAAAGTGGCAGGTGGGGGCGGAGAACATGTACGAACATCCTTAACGGGGGTGCAAGTTGGGGTGGACGTTACAGGATCCGAGAAGGTCTGGAGGACGTTGCAAGCTATTGGTGACGTTGCCTTCGCTTACGCTTATTCTAACGTGCTCATCGAGATACAGGATACCCTGAAATCGACCCCTCCGGAGAACAAGGTCATGAAAAGAGCAAGTTTGATCGGCATCTTGACCACAACATTGTTTTATGTGCTGTGTGGCTGCATAGGTTATGCAGCATTTGGAAATGACGCACCAGGAAATTTCCTCACAGGGTTCGGCTTCTACGAGCCCTTTTGGTTAATAGACTTTGCTAACATCTGCATAGCCGTGCACTTAGTTGGGGCATATCAGGTCTTCTGCCAGCCCATATTTGGGTTCGTAGAGAACTGGAGTAAGGAAAGGTGGTCCAACAGTCAATTTATAAATGGAGAGCACGCTGTGAACTTTCCACTGTGTGGAACCTACCATGTTAACTTCTTCAGGGTGGTGTGGAGAACAACATATGTCATCATCACTGCTTTGATAGCTATGATGTTTCCATTCTTCAATGACTTCCTAGGCCTGATTGGTTCACTGTCCTTTTGGCCATTAACCGTTTACTTCCCCATAGAGATGTACATTAAGCAGTCCAAGATGCAGAGGTTTTCCTTCACGTGGACATGGCTAAAGATATTGAGCTGGGCTTGCTTGATCGTTTCTATTATCTCAGCTGCTGGTTCCATCCAAGGCCTCGCTCAAGATCTTAAGAAATACCAGCCCTTCAAACCCCAGCAATAA 1452 0.4683 MNPDQFQKNSIYVETPEDFGDGGKNFDDDGRVKRTGTWVTASAHIITAVIGSGVLSLAWAMAQMGWVAGPAVLFAFSFITYFTSTLLADCYRSPDPVHGKRNYTYSNVVRSVLGGRKFQLCGLAQYINLVGVTIGYTITASISMVAVKRSNCFHKHGHHDKCYTSNNPFMILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGGEHVRTSLTGVQVGVDVTGSEKVWRTLQAIGDVAFAYAYSNVLIEIQDTLKSTPPENKVMKRASLIGILTTTLFYVLCGCIGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFGFVENWSKERWSNSQFINGEHAVNFPLCGTYHVNFFRVVWRTTYVIITALIAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTWTWLKILSWACLIVSIISAAGSIQGLAQDLKKYQPFKPQQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3236 483 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 13 476 - -
Ssu1g3236 483 Pfam Transmembrane amino acid transporter protein 34 469 IPR013057 -
Ssu1g3236 483 PANTHER OS05G0424000 PROTEIN-RELATED 13 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3236 Ssu-Chr1 84368146 84373393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3236 7 480 Organic Solute Cotransporters AT5G49630 76.151 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3236 K24917 - gmx:100777963 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3236 1 84368146 84373393 Ssu1g3236 1 84368146 84373393 ECH