Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3226 ATGGGAATGGAGCCCATTTGCGGGCAGGCCTACGGGGCGAAGCAATGGAAAACCCTGGGCCTAACCCTGCAGAGAACcgtcctcctcctcctctccgCCTCCGTGCCCATCTCCCTGACGTGGCTCAACATGAAGACCATCCTCTTACGGTGCGGCCAAGACCACCGCATCTCATCCACCGCACAAACCTTCATTCTCTTCTCCATCCCGGACCTCTTCCTCCTCTCCCTCCTCCACCCCCTCCGCGTCTACCTCCGAACGCAAAGCATCACATTGCCCCTGACATACTGCTCCGCCATCTCCGTCCTCCTCCACGTCCCCCTCAACTTCCTCCTCGTCGTTCACTTCAAAATGGGGGTTGCCGGTGTCGCGATAGCAATGGTCTGGACCAACCTCagcctcttcctcttcctctcctcCTTCGTCTACTTCTCCGGCGTCTACAGGGACTCGTGGGTCCCCCCCAGCACCGACTGCCTCAGGGGCTGGTCTTCCTTACTTGCACTTGCGGTTCCAACCTGCGTCTCTGTCTGTCTCGAGTGGTGGTGGTACGAACTCATGATAATTCTCTGCGGGCTTCTGGTCGATCCCAAAGCCACCATTGCTTCCATGGGAATCCTTATCCAAACCACCTCCTTGGTCTACGTCTTCCCGTCGTCTCTCAGCCTCGCCGTGTCCACCAGAGTCGGGAACGAGTTAGGCGCCAACCGTCCCGCCAAGGCCCGCATTTCCATGATCGTGTCTCTCTCCTGTGCGGTCGCTTTAGGCTTCTCCGCGATGCTCTTCACCACCCTAATGAGGCACCAGTGGGGAAGATTCTTCACCAGTGACCAACAGATTCTTAACCTCACCGCCATTGCGTTGCCCATCGTTGGCCTCTGCGAGCTCGGCAACTGTCCTCAGACCACCGGCTGCGGCGTCCTCCGAGGCAGCGCCAGGCCCACCGTCGGAGCCAACATCAATTTGGGCTCGTTTTACCTTGTGGGTATGCCCGTTGCGGTTCTTCTTGGGTTCGTGGGGAAAATGGGCTTTCCCGGCCTCTGGCTTGGGTTGCTTGCGGCCCAAGCCTCTTGTGCTGCTCTCATGATGTTTGTTCTCTGCACCACGGACTGGAATGCGCAGGTGCAGAGGGCCAACGACCTTACTAATGCTTCTGCTCCCGCCAAATCACCTGCTACGTTCACGCGAACCACAGAGTGTAACAATGTCTGTCTTCGAGAGATTGTTGTCGCCGATGATGAGGTTGCCAAGACGCCTTCTCTTGAAACAGACCCTCTCATCATACacactataaattaa 1299 0.5512 MGMEPICGQAYGAKQWKTLGLTLQRTVLLLLSASVPISLTWLNMKTILLRCGQDHRISSTAQTFILFSIPDLFLLSLLHPLRVYLRTQSITLPLTYCSAISVLLHVPLNFLLVVHFKMGVAGVAIAMVWTNLSLFLFLSSFVYFSGVYRDSWVPPSTDCLRGWSSLLALAVPTCVSVCLEWWWYELMIILCGLLVDPKATIASMGILIQTTSLVYVFPSSLSLAVSTRVGNELGANRPAKARISMIVSLSCAVALGFSAMLFTTLMRHQWGRFFTSDQQILNLTAIALPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLGSFYLVGMPVAVLLGFVGKMGFPGLWLGLLAAQASCAALMMFVLCTTDWNAQVQRANDLTNASAPAKSPATFTRTTECNNVCLREIVVADDEVAKTPSLETDPLIIHTIN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3226 432 TIGRFAM matE: MATE efflux family protein 1 348 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu1g3226 432 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 395 - -
Ssu1g3226 432 Pfam MatE 1 111 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu1g3226 432 Pfam MatE 172 335 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu1g3226 432 CDD MATE_eukaryotic 1 377 IPR045069 GO:0042910|GO:1990961
Ssu1g3226 432 PANTHER PROTEIN DETOXIFICATION 1 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3226 Ssu-Chr1 84110589 84111887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3226 K03327 - gmx:100788339 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3226 1 84110589 84111887 Ssu1g3226 1 84110589 84111887 ECH