Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3224 ATGCAGCAAAATAGGAAGCAACTCATAACTGAGAATTTAGCAACAGAtctctcatctctctctttCCCATTTCTCCAAATTCTCTCTTCACACACTTTCTCTCATTCAATCCCTACTCTTCTAGGGTTTTCGATCTCTCTCCTATTCTTTTCAACCTTCTACTCGCTCCTTTTCCCTCCTCATGTagcttctctttttaatttcagTTACCGccataatttcatttttcttttttcaattttttttccgcCTGAGCTTAAATTAATGGCGTCGTTTCGACGGACTCTGTCGCCGGCGCATCATGATCGCCAGTACCTAAACGGCGCGTTTTCCGTTTCGTCTCCGTCGCACAAGCTCCCCTCCGCGAACGCGAAGTACTCGTCGCCGCTGCCGGCGCTGGAGGCGGCGTTCCGGCGTCTCGCGGGCGGCGTGTTCACGCGCCGCCACGGTCGGAAAGGTCAGTGGAGGCGCGCGGCGTTCAGGTGCGTGCTGTGTTTCTTCGTAGGGTTCTTGTTAGGCATGTTCCCGTTCGGGCACGTGGCGGAGGACATTCGGTCGCACGAAATCTCGTTCGAGATGAAGCCGCAGCAGCAGCGGCAGCAGCTGCTTCGGGAAGATCGAGTTCCGCGGAATCGCGTGGACGAGGAGGGTTTCGTGATCGATCCGGTGAGTCTGAGCGCGGAGAGGGAGAGGTTCGATTTCGTGCCGAGGAAGCCGCTGATTGTGGTGACGCCGACGTACGGCCGCGCGTTTCAGGCGTATTTCCTGAACAGGCTGGGGCAGGTGCTGCGGCTGGTGCCGCCGCCGGTGGTGTGGGTGGTGGTGGAGATGAGCGCGGCGTCGATGGAGACGGCGGAGGTGCTGAGGACGACGGGCGTGATGTACAGGCATTTGGTGTGCAATAGGAACGCGACGGATGTGAAGGACAGAGGGGTTCATCAGCGGAACACGGCGTTGGAGCACATTGAGCGGCACAGGCTCGATGGGATTGTTTACTTTGCGGACGATGATAATGTGTATTCTCTCGAGTTGTTTGAGGCCTTGAGGGACGTCAGCCGCTTTGGCACTTGGCCTGTTGCCATGCTTGCACCAAGCAAGAACAAGGCCATTTTGGAGGGTCCCGTATGCAATGCAAGCCAAGTGATTGGATGGCATACAAATGAGAAAAGTAAAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGCTGGCGACGCCCTTCTTCAAATCCCATACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGCtgttcaaaaatattgaattgGCATCTCCATTTGGATGCTCATAATATAGCTTACCCAAAAGGTTGGGTGCTTCAGAAAAACCTAGATGCTGTCATACCTGTAAAGTAA 1476 0.5041 MQQNRKQLITENLATDLSSLSFPFLQILSSHTFSHSIPTLLGFSISLLFFSTFYSLLFPPHVASLFNFSYRHNFIFLFSIFFPPELKLMASFRRTLSPAHHDRQYLNGAFSVSSPSHKLPSANAKYSSPLPALEAAFRRLAGGVFTRRHGRKGQWRRAAFRCVLCFFVGFLLGMFPFGHVAEDIRSHEISFEMKPQQQRQQLLREDRVPRNRVDEEGFVIDPVSLSAERERFDFVPRKPLIVVTPTYGRAFQAYFLNRLGQVLRLVPPPVVWVVVEMSAASMETAEVLRTTGVMYRHLVCNRNATDVKDRGVHQRNTALEHIERHRLDGIVYFADDDNVYSLELFEALRDVSRFGTWPVAMLAPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPSSNPIRQLDTVKEGFQETTFIEQLVEDESQMEGSPPGCSKILNWHLHLDAHNIAYPKGWVLQKNLDAVIPVK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3224 491 Pfam Glycosyltransferase family 43 259 467 IPR005027 GO:0015018|GO:0016020
Ssu1g3224 491 PANTHER GLYCOSYLTRANSFERASES 89 488 - -
Ssu1g3224 491 CDD GlcAT-I 238 469 IPR005027 GO:0015018|GO:0016020
Ssu1g3224 491 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 485 IPR029044 -
Ssu1g3224 491 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 89 488 IPR005027 GO:0015018|GO:0016020
Ssu1g3224 491 SUPERFAMILY Nucleotide-diphospho-sugar transferases 239 484 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3224 Ssu-Chr1 84025141 84028903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3224 89 491 Glycosyltransferase AT1G27600 62.654 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3224 K20869 - gmx:100809892 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3224 1 84025141 84028903 Ssu1g3224 1 84025141 84028903 ECH