Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3223 ATGTCAGATGCAAATAGGACTATTGGcattctattaaatttattgcAGTCTGTTGGCAGTCTTCCTGGTTGCTTGACTATTACTGTTGTAAATTGTTTAGCAGCCATTGCAAGGAAAAGGCCACAACACTATGATACTATTCTTTCAGCATTGCTTGATTTTGATCCAAATGTTCAAACAGCGAAAGGATGTCATGTTGCTAGTATTCAGTACTCCTTAAGAACAGCTTTTTTGGGATTTCTTAGGTGCACTTATTCACCAATACTAGAGTCAAGAGAAAGACTAATAAGGAGTCTACGAGCTATGAATGCGGGGGATGCTGCTGATCAGGTCATTCGTCAGGTtgacaaaatgattaaaaatggtGATCGTTCTACTCGCGATGCACGAGTTAGCAAGGATGATCAACCATCAACTCAGTCACCTGTTTCAGGGGAATTATCTAGAAAAAGACCTGTTCCTCTAGATAATGAACAATTGGCCAATGGTCATGAAACTATCTCTAAGCGGATTCGTTCTGGTCCTGACACTCAGTCTACTTTACCAGCTCAAATAAATGATTCTGGGCAGGATCTTAACTCTGTTAATGGAGTATCACCTAATGTTCCTGTGCTGGATAGTGAACTAACTGCTGTGGAGCAAATGATTGCTGTGATTGGTGCTTTACTTGCTGAAggagagagaggtgctgaatCTCTTGAAATCCTCATTTCAAAGATTCATCCTGATCTGTTGGCTGATATTGTCATAACTAATATGAAGCACTTGCCTAGGACTCCCCCACCACTAGCGAGGCTTGGGAATTTACCAGTAACACGACAATTAAGCTCCCAAGTCAGTCAATCACAGGTTAATGCAGCTTCTGTTCCaataaattttgtccaatcCTTGTCTGGTACTGCCCAAGCTTCATTCCCTTCAACTACGGCCACCGTCACTGTTACTGCTACTGCTTCTGCCACTACTTTATTACCATCTGACACCTCTAACTTCAGTAACCAGCCTGCTGATTCTAAACGTGATCCACGGCGGGATCCCCGGCGCCTGGATCCCCGGCGTGTAGTGGTAACTCCTGGAGGAGCAACTGTACCAATTGTAGATGATACTGGGgccacaaaattagagtttgatGAACCTATGTCTTCCATTAAGCCTGTTTCACATCCTGTCGTGACTGCTGATGACAGTACTCCATCGGATCtaacagtaaaaataaaagatgacgATATGATCTCTGAAGCTTCCCCAGTTTCAGGACCTGATCAGGTAACTCCAAAAACAGACGTTCTGGAAAGGCCTGGAGATATTCATCGGATTACGGAAGCAGATATTTCCTTGGATCATTCACTCTCTACTACTGATTTAAGAGATGAGGATCTGAGTACAATGAAGCTCTCGGATGATACTGAAACAATTGGGACAGATTCATCATCTATTTTAGAGTTTGATCAATTTTCTCTTGACGTCCATGTTGAATCTACATTGGAAGATACCTGTCTGGAGTTACCACAGCTTCCGCCTTATGTTGAACTATCCAAAGAACAGGAATGTAAGGTGAAAAACATGGCTGTTAGCCATATAATCGATTCATACAAACATTTGCATGGGACAGATTGTCAGCAGTTTTGCATGCCACTACTTGCTCGACTAGTAGCTCAGATTGATGACGACAGTGAGTTTGTTATGGTGCTGCAAAAACACATCCTGGAAGACCACTGGCGAAAGGGGCATGAACTTGTACTGCATGTTTTGTACCATCTGCACTCCCTCATGATATTGGATTCAGTTGGAAATGCTTCATCTTCTGctgttttatatgaaaaatttctCTTGGGAGTGGCCAAAACTTTGTTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTCCCACTTTTGCCTGAATCGTCCTTGAACATTTTGAATGATCTCTGCTATTCTGATGTTATTGGTCATGATGGAAAAATTATCCGTGACATTGAACGTGTGACTCAAGGCCTTGGTGCCATCTGGAGTTTAATTTTGGGGCGTCCACAAAATCGCCAAGCCTGTTTAGGAATAGCATTGAAGTGTGCTGTCCACCCACAGGATGAGATTCGAGCAAAAGCTACTCGGCTGGTGACAAACAAGCTCTTTCAGCTTAGTTACATATCAGGAGATGTTGAAAATTTTGCAACAAAAATGCTGCTTTCTGCTGTAGACCATGAAGTTTCAGATACAGGTCTTTTGCAATCTGGACCTACTGAACAAAGAGCTGAGGCAGAGGTTGAAAGTCATGAAACAAGTACTTCGCAGGTTTCAGAGTccacaatttttgaaaatgactcTGCTAGAGTTGCTAAACCATTGATTCAAAGTGTTCCGTCTATATCATTTTCTGAAGCTCAACGCctcatttctttgttttttgcttTATGTACAAAGAAACCCAGTCTTCTTCAGATTGTATTTAATGTGTATGGGCATGCcccaaaaattgtaaaacagGCTTTTCATCGCCACATTCCTATTGTTGTGAGGGCATTAGGGCAATCTTATTCTGAATTGCTCCATATCATATCTGATCCACCACAAGGAAGTGAGAATCTTCTGACACTGGTACTGCAAATATTGACCCAAGACACAACGCCATCTTCTGATTTGATATCTACCGTTAAACGCTTATATGAAACTAAATTTAGAGATGTTACAATTCTTGTTCCATTACTGTCTTCGCTTTCAAAACAGGAGGTTTTACCAATATTCCCTCAGCTTGTTGATCTTCCATTGGAAAAGTTTCAAAGGGCACTTGCTCACATACTACAGGGTTCAGCTCATACAGGTCCAGCTTTAACACCTGTAGAAGTGTTGGTTGCAATCCATGGAATTGTTCCGGAGAAAGATGGCCTTGCACTTAAGAAGATAACAGATGCTTGCTCGGCTTGCTTTGAGCAACGTACAGTGTTCACACAACAGGTTCTGGCGAAGGCATTGAACCAGATGGTTGATCAAACTCCGCTGCCTCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTgGTTGATTTTGTTATGGAGATACTCTCAAAACTTGTGACTAAACAGGTGTGGCGAATGCCAAAACTTTGGGTTGGTTTCTTAAAATGTGTATATCAGACACAGCCACGTTCTTTTCATGTATTATTGCAGTTGCCACCTCAACAACTGGAAAGTGCACTCAACAGGCACGCTAATCTCAGAGGTCCCCTTGCTTCTTATGCCAGCCAACCAACTGTAAAATCATTAGTTAGTAGATCAACTTTAGCAGTTCTTGGTCTTGCAAATGAAACTCATGTGCAGCAACATTTGTCAACTTCGTTACATTCTTCTGACACAAGTTCTTCAGTTCACGGAGCAACTTTGACGTGA 3417 0.3989 MSDANRTIGILLNLLQSVGSLPGCLTITVVNCLAAIARKRPQHYDTILSALLDFDPNVQTAKGCHVASIQYSLRTAFLGFLRCTYSPILESRERLIRSLRAMNAGDAADQVIRQVDKMIKNGDRSTRDARVSKDDQPSTQSPVSGELSRKRPVPLDNEQLANGHETISKRIRSGPDTQSTLPAQINDSGQDLNSVNGVSPNVPVLDSELTAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPRTPPPLARLGNLPVTRQLSSQVSQSQVNAASVPINFVQSLSGTAQASFPSTTATVTVTATASATTLLPSDTSNFSNQPADSKRDPRRDPRRLDPRRVVVTPGGATVPIVDDTGATKLEFDEPMSSIKPVSHPVVTADDSTPSDLTVKIKDDDMISEASPVSGPDQVTPKTDVLERPGDIHRITEADISLDHSLSTTDLRDEDLSTMKLSDDTETIGTDSSSILEFDQFSLDVHVESTLEDTCLELPQLPPYVELSKEQECKVKNMAVSHIIDSYKHLHGTDCQQFCMPLLARLVAQIDDDSEFVMVLQKHILEDHWRKGHELVLHVLYHLHSLMILDSVGNASSSAVLYEKFLLGVAKTLLDSFPASDKSFSRLLGEVPLLPESSLNILNDLCYSDVIGHDGKIIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAVHPQDEIRAKATRLVTNKLFQLSYISGDVENFATKMLLSAVDHEVSDTGLLQSGPTEQRAEAEVESHETSTSQVSESTIFENDSARVAKPLIQSVPSISFSEAQRLISLFFALCTKKPSLLQIVFNVYGHAPKIVKQAFHRHIPIVVRALGQSYSELLHIISDPPQGSENLLTLVLQILTQDTTPSSDLISTVKRLYETKFRDVTILVPLLSSLSKQEVLPIFPQLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVTKQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNRHANLRGPLASYASQPTVKSLVSRSTLAVLGLANETHVQQHLSTSLHSSDTSSSVHGATLT 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3223 1138 PANTHER SYMPLEKIN-RELATED 1 1138 - -
Ssu1g3223 1138 PANTHER SYMPLEKIN-RELATED 1 1138 - -
Ssu1g3223 1138 Pfam Symplekin tight junction protein C terminal 900 1078 IPR022075 -
Ssu1g3223 1138 MobiDBLite consensus disorder prediction 172 193 - -
Ssu1g3223 1138 MobiDBLite consensus disorder prediction 337 352 - -
Ssu1g3223 1138 Gene3D - 1 134 IPR011989 -
Ssu1g3223 1138 MobiDBLite consensus disorder prediction 119 193 - -
Ssu1g3223 1138 MobiDBLite consensus disorder prediction 119 134 - -
Ssu1g3223 1138 MobiDBLite consensus disorder prediction 324 366 - -
Ssu1g3223 1138 Pfam Symplekin/PTA1 N-terminal 2 110 IPR032460 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3223 Ssu-Chr1 83993629 84018160 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3223 K06100 - gmx:100789876 1923.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3223 1 83993629 84018160 Ssu1g3223 1 83993629 84018160 ECH