Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3218 ATGGCCGTTTCTACCACTTTCTCCGGTTGCAAATTGGAGGCTCTATTGCTCAAAtgctcttcctcttcctcgCCGTCGCCTTCAAGGGCGTTACCCGCCGCTTTTCTCGGCCAAAACAGAAGAACCGTCATTCAGAGAGGGGTTATTCGCTGCGACGCTCAGCCCTCTGATGCATTTGCCATCACCGATGCTCCAAATAATGCTACCACTCTCTCCGCTCTTGAGCAGCTCAAGACTTCTGCAGCTGATAGGTATACAAAGGAAAGGAGCAGCATTGTTGTCATTGGGCTTAGTGTGCATACTGCACCTGTGGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAGTGGCCTAGAGCTATTGCAGAGTTGTGTAGTCTTAATCATATTGAAGAAGCAGCTGTTCTAAGCACGTGCAACCGAATGGAGATATATGTTCTTGCTCTGTCCCAACATCGTGGTGTCAAAGAGGTCACGGAATGGATGTCAAAAACAAGTTCTGTCCCTGTGTCAGAGCTTTGTCAGCACCGGTTTTTACTTTACAACAATGATGCCACACAGCATCTTTTCGAAGTATCAGCAGGTCTTGACTCTCTTGTTTTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAACAAGTTGTCAAAGTTGGACAGGGCGTTAACGGCTTTGGGAGAAACATCAGTGGGCTATTCAAGCATGCAATTACTGTCGGGAAAAGGGTTAGAACTGAGACTAATATTGCTTCTGGGGCAGTTTCTGTGAGCTCAGCTGCCGTTGAATTGGCCTGTATGAAGCTACCTGAAGCCTCACTTGATAATGCCAGGATGTTGGTTATTGGTGCTGGCAAGATGGGAAAGCTTGTGATCAAACATTTGGTGGCAAAAGGTTGCAAAAAGATGGTGGTTGTCAATAGAACTGAGAAGAGAGTTGCTGCAATACGTGAAGAAATGAAGGATATTGAGATCATCTACAAACCCCTTTCAGAAATACTCACCTGTGCCAGTGAAGCAGATGTAGTTTTCACCAGTACTGCATCAGAAAACCCATTATTCCTGAAAGATGATGTCAAGGACCTTCCTCCTGCAAGTAAAGATGTTAGGAGGCCGTCGCTTTTTTGTTGA 1122 0.4501 MAVSTTFSGCKLEALLLKCSSSSSPSPSRALPAAFLGQNRRTVIQRGVIRCDAQPSDAFAITDAPNNATTLSALEQLKTSAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSSVPVSELCQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELACMKLPEASLDNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEKRVAAIREEMKDIEIIYKPLSEILTCASEADVVFTSTASENPLFLKDDVKDLPPASKDVRRPSLFC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3218 373 Coils Coil 303 323 - -
Ssu1g3218 373 Gene3D - 251 373 - -
Ssu1g3218 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 250 358 IPR036291 -
Ssu1g3218 373 Gene3D - 90 250 IPR036343 GO:0008883|GO:0033014|GO:0050661
Ssu1g3218 373 Hamap Glutamyl-tRNA reductase [hemA]. 91 373 IPR000343 GO:0008883|GO:0033014|GO:0050661
Ssu1g3218 373 ProSitePatterns Glutamyl-tRNA reductase signature. 188 211 IPR018214 GO:0008883
Ssu1g3218 373 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 95 245 IPR015895 GO:0008883|GO:0033014|GO:0050661
Ssu1g3218 373 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 91 247 IPR036343 GO:0008883|GO:0033014|GO:0050661
Ssu1g3218 373 CDD NAD_bind_Glutamyl_tRNA_reduct 92 368 - -
Ssu1g3218 373 PANTHER GLUTAMYL-TRNA REDUCTASE 1 371 - -
Ssu1g3218 373 Pfam Shikimate / quinate 5-dehydrogenase 261 364 IPR006151 -
Ssu1g3218 373 TIGRFAM hemA: glutamyl-tRNA reductase 92 359 IPR000343 GO:0008883|GO:0033014|GO:0050661
Ssu1g3218 373 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3218 Ssu-Chr1 83880692 83882678 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3218 K02492 - gmx:100782247 610.142