Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3208 ATGGCCTCCATCGAGATAGAGCGCGACGCGGAGTGCCGAAAGGGCGCGAAAAACGACGACGTTTCCCCGATCGAGGAGGTTCGGCTGGTGGTGTCGAACGACGACGATCCGAGCGAGCCGGTGTGGACGTTCCGCATGTGGTTCCTGGGGATCGTGTCGGTGGTGCTGCTTTCGTTCCTGAACACTTTCTTCGGGTACAGGAAGGAGCCTCTTCTCGTGACGATGATTTCGGTTCAGGTGGCGACGCTTCCCGTCGGGCGCTTCATGGCGAGGGTGCTCCCGCGGAGCAAGGTTCGGATCGGAGGGCGAGAGTTCTCGCTCAACCCTGGTCCCTTCAACATGAAGGAGCACGTGCTCATTTCCATATTCGCCAACGCGGGCGCCGCGTTTGGGAACGGCTCCGCTTATGCCGTCGGGATTGTGGATATAATCCGCGCGTTTTATGGCCGGAAGATTACATTCTTGGCCAGCTGGCTCCTCGTCATCACCACGCAGGTATTGGGCTACGGATGGGCGGGGATAATGAAGAAGTACGTTGTGGATCCCGCACAGATGTGGTGGCCCGCTACTCTTGTACAAGTGTCTCTGTTCAGGTAA 597 0.5846 MASIEIERDAECRKGAKNDDVSPIEEVRLVVSNDDDPSEPVWTFRMWFLGIVSVVLLSFLNTFFGYRKEPLLVTMISVQVATLPVGRFMARVLPRSKVRIGGREFSLNPGPFNMKEHVLISIFANAGAAFGNGSAYAVGIVDIIRAFYGRKITFLASWLLVITTQVLGYGWAGIMKKYVVDPAQMWWPATLVQVSLFR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3208 198 PANTHER OLIGOPEPTIDE TRANSPORTER 4 15 198 - -
Ssu1g3208 198 Pfam OPT oligopeptide transporter protein 42 198 IPR004813 GO:0035673
Ssu1g3208 198 PANTHER ISP4 LIKE PROTEIN 15 198 IPR004648 GO:0055085
Ssu1g3208 198 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 25 198 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3208 Ssu-Chr1 83639553 83640348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3208 1 198 Organic Solute Cotransporters AT1G09930 72.222 6.49e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3208 - - gmx:100785973 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3208 1 83639553 83640348 Ssu1g3208 1 83639553 83640348 ECH