Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3197 ATGAAGGTTCTTGCAGTACAGATAGTACCCGTGATTCAACCAGCACAGATGACTTCTCCGATTATCTTTTTGGTGATTTCAGGGAATGGCTGGAGTAGTGTGTGGAGGAATTCTGATTCTGACACATCCTCGTCCTCTTCATCTTCTCCCTTAAACTCTCGACATTCGCCACTATCTGATATGGACCGGTATGACTCAGTTTCTCCTGATGCAGCTGGTTTGCGAATTCCCACAGGTTCAAGTGCGGAGATAGACGATCCTGTATACAGGAACGGATTGGTGGATGTTGAAAGGAGAGGGATAGATGTTTCTCGTTTGCATTCTAACACAACTTTACAGCATAGAAAATTAGATAGTGGTAGGATTAGGAGCAATAGTAGTAGTAGGGAGACTGATTCTTTTCTGAAACTAGGATCTAACCATTTTAATGATATAGACTCTGGTGTATCATGTAGAAAGTCAAGGAAAAGAAcggattaa 480 0.4125 MKVLAVQIVPVIQPAQMTSPIIFLVISGNGWSSVWRNSDSDTSSSSSSSPLNSRHSPLSDMDRYDSVSPDAAGLRIPTGSSAEIDDPVYRNGLVDVERRGIDVSRLHSNTTLQHRKLDSGRIRSNSSSRETDSFLKLGSNHFNDIDSGVSCRKSRKRTD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3197 159 MobiDBLite consensus disorder prediction 37 87 - -
Ssu1g3197 159 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 27 143 - -
Ssu1g3197 159 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 27 143 - -
Ssu1g3197 159 MobiDBLite consensus disorder prediction 37 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3197 Ssu-Chr1 83428595 83429074 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3197 - K11855 lja:Lj0g3v0158389.1 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3197 1 83428595 83429074 Ssu1g3197 1 83428595 83429074 ECH