Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3195 ATGGACGTTAAGTTCGCCACCGCCTTAATACTTTTCTCTGTAATTTGCCTCATCAGGGGCAATGCCATTGACCCTTGTGCCTCTCAACCGGATGACTCCGACCTCAACGTGATTCCCATCTACAGCAAATGCTCACCGTTCAAGCCCCCCGGGGCAGACTCGTGGGACAGCAGAATTATAAACATGGCCTCAAAAGACCCAGTCCGAGTGAAGTACTTGTCCACATTAGTGGGCCAAAAGACGGTGTCCACGGCCCCAATCGCTTCGGGCCAGGCCTTCAACATTGGTAACTACGTGGTGAGGGTCAAACTGGGAACCCCCGGTCAACTGCTGTTCATGGTCCTGGACACCAGCACCGACGAGGCCTTCGTCCCATGCTCCGGCTGCACCGGCTGCTCCGACACCACTTTCTCGCCCAAAGCCTCCACCAGTTACGGCCCATTGGACTGCTCCGTCCCGCAGTGCGGTCAGGTCCGTGGGCTCTCGTGCCCCGCCACAGGAACCGGCGCGTGCTCCTTCAACCAATCCTACGCGGGGTCCTCTTTCTCCGCCACGCTCGTCCAAGACTCCCTCAGATTAGCCGCTGATGTTATCCCCAACTACTCCTTCGGCTGCGTCAACGCCATCTCCGGTGCGTCGGTTCCAGCCCAAGGGCTTTTGGGCCTGGGCCGTGGCCCATTGTCGTTGCTCTCCCAATCCGGGACACTCTACTCGGGTGTCTTCTCCTACTGCCTCCCCAGCTTCAAATCGTACTACTTCTCCGGGTCCCTCAAGCTCGGGCCCGTGGGCCAGCCCAAGAGCATTCGGACCACCCCGCTTCTGCGCAACCCGCACCGGCCTTCTCTGTACTACGTGAACTTCACCGGAATCAGCGTGGGGCGCGTCCTCGTGCCCTTGCCCAGCGAGTATCTTGCGTTTAACCCGAATACCGGATCCGGAACCATAATTGATTCGGGCACGGTGATAACCCGGTTCGTGGAACCCGTGTACAGCGCGGTGAGGGAGGAGTTCAGGAAGCAGGTGGCAGGGCCATTCTCGAGCATTGGAGCTTTCGACACGTGTTTTGTGAAGACGTACGAAGCACTGGCACCGACAATTACGCTGCATTTCGAGGGATTGGACCTGAAGCTGCCGTTGGAGAACAGCTTGATCCATAGCAGCGCTGGGTCGCTGGCTTGCCTTGCAATGGCGGCGGCACCCGATAATGTGAACTCGGTGTTGAACGTCATTGCCAACTTTCAGCAACAGAATCTTAGGATTTTGTTTGATACCGTCAATAACAAGGTTGGCATAGCCCGTGAGGTTTGTAACTAG 1314 0.5738 MDVKFATALILFSVICLIRGNAIDPCASQPDDSDLNVIPIYSKCSPFKPPGADSWDSRIINMASKDPVRVKYLSTLVGQKTVSTAPIASGQAFNIGNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQSYAGSSFSATLVQDSLRLAADVIPNYSFGCVNAISGASVPAQGLLGLGRGPLSLLSQSGTLYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNFTGISVGRVLVPLPSEYLAFNPNTGSGTIIDSGTVITRFVEPVYSAVREEFRKQVAGPFSSIGAFDTCFVKTYEALAPTITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDTVNNKVGIAREVCN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3195 437 Gene3D Acid Proteases 261 437 IPR021109 -
Ssu1g3195 437 SUPERFAMILY Acid proteases 91 436 IPR021109 -
Ssu1g3195 437 Pfam Xylanase inhibitor C-terminal 283 432 IPR032799 -
Ssu1g3195 437 Pfam Xylanase inhibitor N-terminal 98 260 IPR032861 -
Ssu1g3195 437 PANTHER ASPARTYL PROTEASE-RELATED 7 437 IPR001461 GO:0004190|GO:0006508
Ssu1g3195 437 PANTHER ASPARTYL PROTEASE AED3 7 437 - -
Ssu1g3195 437 ProSiteProfiles Peptidase family A1 domain profile. 98 432 IPR033121 -
Ssu1g3195 437 Gene3D Acid Proteases 76 260 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3195 Ssu-Chr1 83385495 83386808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3195 89 437 Miscellaneous Gene Families AT1G77480 27.179 3.45e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3195 - - gmx:100816307 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3195 1 83385495 83386808 Ssu1g3195 1 83385495 83386808 ECH