Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3193 ATGAGTCTTAAAGGGTTTTTCGAAGGTGGCGTTGCTTCCATCGTCGCAGGCTGCACCACGCACCCACTCGACCTCATCAAAGTCCGCATGCAGCTTCAAGAAACGCACAATCTCCGCCCAGCGTTTGCCTTTCACGCGCACTCTCCAATGCCGCCGCCTCCTCCTCCCTCCGGACCCATCTCCGTCGGCGTCCGCATCGTCCAGTCCGAGGGCGTCGCCGCCCTCTTCTCCGGCGTCTCCGCCACCGTGCTCCGCCAGACGCTCTACTCCACCACCCGGATGGGCCTCTACGACGTGCTGAAGCAGCAGTGGACCGACCCGGAACAGGGCACCATGCCCCTCTCCCGGAAGATAACGGCGGGCCTCATCGCCGGCGGGGTCGGCGCCGCCTTGGGGAACCCCGCCGACGTGGCGATGGTGCGCATGCAGGCCGACGGGCGTGTCCCGCCGGCGGAGCGGCGGAACTACAAGGGCGTGTTCGACGCGATACGGCGCATGTGTAACCAGGAGGGGGTGGGTAGCCTGTGGCGCGGTTCAGCGCTTACGGTGAACCGCGCGATGATCGTGACGGCTTCTCAGTTGGCCTCGTATGATCAGTTCAAGGAGACCATTCTGGGACGCGGGTGGATGCAGGACGGGCTTGGCTGCCACGTGGCAGCGAGTTTTGCGGCGGGTTTTGTGGCGGCGGTTGCGTCCAATCCCATTGATGTTATAAAGACTAGGGTGATGAACATGAAGGTGGGGGCCTATAATGGGGCTTTGGATTGTGCTCTCAGGACTGTTAGGGCTGAAGGACCTCTTGCCCTTTATAAGGGATTCATCGCTACAATTTCAAGGCAGGGTCCTTTTACGGTGGTCCTCTTTGTTACCCTTGAACAAGTCAGGAAGCTGCTCAAGGAGTTTTGA 906 0.6104 MSLKGFFEGGVASIVAGCTTHPLDLIKVRMQLQETHNLRPAFAFHAHSPMPPPPPPSGPISVGVRIVQSEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQQWTDPEQGTMPLSRKITAGLIAGGVGAALGNPADVAMVRMQADGRVPPAERRNYKGVFDAIRRMCNQEGVGSLWRGSALTVNRAMIVTASQLASYDQFKETILGRGWMQDGLGCHVAASFAAGFVAAVASNPIDVIKTRVMNMKVGAYNGALDCALRTVRAEGPLALYKGFIATISRQGPFTVVLFVTLEQVRKLLKEF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3193 301 PRINTS Mitochondrial brown fat uncoupling protein signature 97 109 IPR002030 GO:0006839|GO:0031966
Ssu1g3193 301 PRINTS Mitochondrial brown fat uncoupling protein signature 209 227 IPR002030 GO:0006839|GO:0031966
Ssu1g3193 301 PRINTS Mitochondrial brown fat uncoupling protein signature 166 183 IPR002030 GO:0006839|GO:0031966
Ssu1g3193 301 PRINTS Mitochondrial brown fat uncoupling protein signature 286 301 IPR002030 GO:0006839|GO:0031966
Ssu1g3193 301 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 203 IPR018108 -
Ssu1g3193 301 SUPERFAMILY Mitochondrial carrier 3 294 IPR023395 -
Ssu1g3193 301 Pfam Mitochondrial carrier protein 112 205 IPR018108 -
Ssu1g3193 301 Pfam Mitochondrial carrier protein 4 103 IPR018108 -
Ssu1g3193 301 Pfam Mitochondrial carrier protein 216 299 IPR018108 -
Ssu1g3193 301 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 297 IPR018108 -
Ssu1g3193 301 Gene3D Mitochondrial carrier domain 4 300 IPR023395 -
Ssu1g3193 301 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 1 301 - -
Ssu1g3193 301 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 103 IPR018108 -
Ssu1g3193 301 PANTHER MITOCHONDRIAL UNCOUPLING PROTEIN 5-LIKE 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3193 Ssu-Chr1 83303945 83304850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3193 1 300 Miscellaneous Gene Families AT5G09470 58.383 3.45e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3193 K15104 - gmx:100790234 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3193 1 83303945 83304850 Ssu1g3193 1 83303945 83304850 ECH