Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3192 ATGACCAACACAAGTGCAGAATTGTCTCAGGGAAATGGTGGTgtttctcttcctcctcctaATCCCCAGTCTGGGCCACCAGAGCAACATAACCGTTCTCAAGGCGGCGGCGGCAATATGATTTTCAAGAGTGGACCACTTTTCATCTCTTCCAAAGGAATTGGATGGACATCCTGGAAGAAAAGGTGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCAAATGCTGTCCCTCAGAAGGGAAATGAAGTGAATTTGACCCTTGGAGGCATTGACCTCAACAATTCAGGCAGTGTTGTTGTTAAACCAGATAAGAAACTTTTGACTGTACAATTTCCTGATGTTCATGATGGACGAGCTTTCACACTTAAGGCTGAAACTACGGAGGATTTATATGAGTGGAAGACTGCACTTGAGAATGCTTTGGCACTGGCACCTAGTGCAGCCAATGTTACAGAGCAAAATGCAAAGGAAAGAGAACCAGCTAAATCTACCGTCATTGGCCGGCCAATTTTACTTGCTTTGGAGGATGTTGATGGAACTCCATCATTTTTGGAGAAAGCCCTAACGTTCATAGAAGAGCATGgaGCCAATATAGAAGGAATCTTGCGACAAGCAGCTGATGTTGATGAGGTTGAACGTCGTGTTCGGGAATATGAACAAGgaaaagttgagttttctccAGAAGAGGATGCACATGTTGTTGGTGATTGTGTTAAGCATGTACTTCGCGAATTGCCATCTTCTCCAGTCCCTGCATCTTGTTGTAAGGCACTGTTAGAAGCTTGCCGCACTGAGCGTGGTAGTAGGGTTGCTTCTATGCGTGCAGCAATAAATGACACTTTCCCTGAACCAAATCGCCGCTTATTGCAAAGAATACTTATGATGATGCAAACTGTGGCTTCACGCAAAGCTGTGAATAGAATGAGCTCCTCAGCTGTGGCAGCTTGCATGGCGCCTTTACTTCTTCGCCCCCTTCTAGCTGGAGAAtgtgaaattgaaaatgattttgatgtAGGTGGTGATGGTTCTGTTCAACTTTTACAAGCAGCTGCTGCAGCAAACCATGCTCAAGCAATTTGTATAACCTTATTAGAAGAATATAGCAGCATATTTGGGGAAGGTTCTGTGTCCCCTGATATATATACCGACTCAGAAGAAGAGAGTGGATCTGAGAGTGAGGAGGCAACTGATGATGATTTGTcctatgatgatgatgatgattatgatgatgatgatgaatcaATACATGAGTCTGATGCAGATGATGATCTTCTTAGTGAATCGTACAGCGAAGCTGGTGATTCCGAGGCTGATGATGCATGTGATGATGAGGACCATGATCATGCTAGTTCAAGTTCGAAATCCTCAGGTGTGAGTGAAAAATTGAAAGCCACTCAAAAGTTATCATCAAAGTCACTTGAAGGTTCACTAACTCAACATGAAGATATCAAAAGGTCTGAACATTTCACGAGTCCAAATAAGACTGGCTATGTAGATCAGTCCAATAAGCCTGCTGATATAGTTGGAGGAATTTCCACTGACCAAGCTACATTGCATAATTTAAATTCTCCTAGTCCTGCTTCATGTATCAAAAAATCCAATACCATGTCCAATGGCCCAGCACCTCGGCATCGCACCATATTGGGGCGCACCTCTGCTAGGAAGAATCTTTCCATGgaatccattgattttcctaTTGAAAATGAAGATGAAATTGAAAGGCTTGAAGCTGCTAGGACAGAATTACAAACCCAAATTGCAGAGGAGGTGAAGGCAAATGCAAAGCTGCAATCTCATGTGGACCAACAAAAAAAAGCCTTGGAAGAGCGTCGTCTGGCTCTTGAGCAAGATGTGGCTAGACTACAGGAACAGTTGCACATGGAAAAGAATTCTCGGGTAGCTCTTGAGACCAAGGCAGAGCTTGAGAAATTAGCTCTGGTAGAAGCAGATCTTGCCAACTTAGAGCGGAAGGTTGAGGAGATTGGGGTGAGGCTTAATGCACAACTTGAGCGGCATCACGGAACTACTACGGATTTCTCTAATCAATCGCGGCAGATATCAAATCAGGAAAGAAAATTCAGGAAATCCAAGGCAGATGCTGAAGTTGCTGCCACATTACAATCTGACAGATCAATAAGTAAGGTAATGGCAAAACAGGACACTCATATTGCTGGAGCAGAAAATGATATTGAGAGAAAGCCAGAGTCAACACCATTACCAAACAAACATCCACCAACTAGCTCCAAGAAATCTGGTACAAAGGGTGAGGTGGGACGAAGTCAGATTGCAAATGAACTCCAAAATATGGATAAAGGCCGAGACTCAAGTCGCTCTGCACACAAtgttgaaaaaggaaaagggtcTGAACGTCCTCAAACACTTCCATCCCCCAATAGATATGGAGGGTCTGAAGCTCTCTCTGTGCCAAACCCGGAAAAGGGTAAAGGGTCAGAGCCACTTCAGATCTCGGACAAAGGATCGAGCAAAGGTAAATCACATCAAAGTTCAGACAAACTGAAAAAATCAGATAGCCAGCCAGCCCACCACTCAGATGGATGGAATCAGAGTCAATATCCAAAACACTTGGAAAGAGGTAGGTCAGAAGGCCATCAGACTTTTAATGTGGATAAAGGTCGATAA 2655 0.4154 MTNTSAELSQGNGGVSLPPPNPQSGPPEQHNRSQGGGGNMIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAVPQKGNEVNLTLGGIDLNNSGSVVVKPDKKLLTVQFPDVHDGRAFTLKAETTEDLYEWKTALENALALAPSAANVTEQNAKEREPAKSTVIGRPILLALEDVDGTPSFLEKALTFIEEHGANIEGILRQAADVDEVERRVREYEQGKVEFSPEEDAHVVGDCVKHVLRELPSSPVPASCCKALLEACRTERGSRVASMRAAINDTFPEPNRRLLQRILMMMQTVASRKAVNRMSSSAVAACMAPLLLRPLLAGECEIENDFDVGGDGSVQLLQAAAAANHAQAICITLLEEYSSIFGEGSVSPDIYTDSEEESGSESEEATDDDLSYDDDDDYDDDDESIHESDADDDLLSESYSEAGDSEADDACDDEDHDHASSSSKSSGVSEKLKATQKLSSKSLEGSLTQHEDIKRSEHFTSPNKTGYVDQSNKPADIVGGISTDQATLHNLNSPSPASCIKKSNTMSNGPAPRHRTILGRTSARKNLSMESIDFPIENEDEIERLEAARTELQTQIAEEVKANAKLQSHVDQQKKALEERRLALEQDVARLQEQLHMEKNSRVALETKAELEKLALVEADLANLERKVEEIGVRLNAQLERHHGTTTDFSNQSRQISNQERKFRKSKADAEVAATLQSDRSISKVMAKQDTHIAGAENDIERKPESTPLPNKHPPTSSKKSGTKGEVGRSQIANELQNMDKGRDSSRSAHNVEKGKGSERPQTLPSPNRYGGSEALSVPNPEKGKGSEPLQISDKGSSKGKSHQSSDKLKKSDSQPAHHSDGWNQSQYPKHLERGRSEGHQTFNVDKGR 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3192 884 MobiDBLite consensus disorder prediction 1 37 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 729 743 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 380 548 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 866 884 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 1 18 - -
Ssu1g3192 884 CDD PH 43 142 - -
Ssu1g3192 884 Pfam PH domain 43 146 IPR001849 -
Ssu1g3192 884 SMART PH_update 41 149 IPR001849 -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 389 448 - -
Ssu1g3192 884 SUPERFAMILY PH domain-like 13 147 - -
Ssu1g3192 884 Coils Coil 573 597 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 775 792 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 518 546 - -
Ssu1g3192 884 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 4 780 - -
Ssu1g3192 884 MobiDBLite consensus disorder prediction 728 884 - -
Ssu1g3192 884 SUPERFAMILY GTPase activation domain, GAP 185 378 IPR008936 GO:0007165
Ssu1g3192 884 MobiDBLite consensus disorder prediction 679 704 - -
Ssu1g3192 884 CDD RhoGAP 186 324 - -
Ssu1g3192 884 Coils Coil 609 676 - -
Ssu1g3192 884 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 4 780 - -
Ssu1g3192 884 Gene3D Rho GTPase activation protein 153 377 IPR008936 GO:0007165
Ssu1g3192 884 SMART RhoGAP_3 183 373 IPR000198 GO:0007165
Ssu1g3192 884 MobiDBLite consensus disorder prediction 457 481 - -
Ssu1g3192 884 ProSiteProfiles Rho GTPase-activating proteins domain profile. 177 376 IPR000198 GO:0007165
Ssu1g3192 884 MobiDBLite consensus disorder prediction 835 852 - -
Ssu1g3192 884 ProSiteProfiles PH domain profile. 40 147 IPR001849 -
Ssu1g3192 884 Pfam RhoGAP domain 186 329 IPR000198 GO:0007165
Ssu1g3192 884 MobiDBLite consensus disorder prediction 747 774 - -
Ssu1g3192 884 Gene3D - 28 148 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3192 Ssu-Chr1 83288842 83302984 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3192 - - gmx:100796201 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3192 1 83288842 83302984 Ssu1g3192 1 83288842 83302984 ECH