Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3189 ATGAAATTTTCAGCGATTTACCGTAGCAGGCATAGTTCCTCTCAATCATCTTCGTTGCCATGGATATCTCCGCTTAAATTCGCAAAACCTGCGGAACCTAAACCGGACCCTCCCCCTGAAATTAGTGTCGAAGCTGCGAGGAAGCGCAAGTATATCTCTCACGACTCTGCCATCGATTTGATCAAACGGGAGAAAGATCCGCAGCATGCCTTGAAAATattcaacatggtatcagaaCAGAAGGGTTTTCAGCACAACAACGCCACCTACGCGACCATTCTCGAAAAACTCGCTCGCTGCAACAAGTTTCACGCCGTGGATCGAGTCCTGCGTCAAATGACCTACGAAACCTGCAAATTCCACGAGGGTACATTCGTTAACCTCATGAAGCATTTTTCGAAATCCTCCCTTCACGAAAAGGTGCTCCACGCGTTTTTCTCCATTCAGCCAATCGTTAGGGAAAAACCCTCTCCCAAAGCTCTCAGCACTTGTCTCAATCTCCTTCTTGACACGAACCGGGTCGATTTGGCGCGAAAACTGCTCTTGCATGCCAAACGGCGTCTGACACACAAGCCAAACGTGTGCGTATTTAATATCTTGGTGAAGTACCACTGCAAGAATGGGGATCTTGAATCTGCTTTTGAAGTTGTGAAGGAAATGAGGAATTCCAAGTTGTCTTACCCTAATTTAGTTACTTACTCGACCCTGATGGATGGGCTCTGTCGAAATGGAAGACTCAAAGAAGCCTTTGAACTGTTTGAGGAAATGGTCTCAAGGGATCAGATTGTCCCTGATCCTCTTACTTACAATGTTTTGATCAACGGATTTTGCCGCGGAGGGAAACCTGACCGTGCGAGAAATGTGATTGAATTTATGAAGAATAATGGATGTTATCCAAATGTGTACAATTACTCGGCCCTGGTGAATGGTTTGTGTAAAGTTGGGAAACTGCAAGATGCAAAAGGGGTTTTGGCTGAGATGAAGGGCTCTGGTTTGAAACCGGATACGGTTACTTACACAAGTTTGATCAATTTCTTGTGTAGGAATGGGCAAATTGGTGAAGCTATGGAGTTGCTTGAAGAAATGAAGGAGAGCGAGTGCCGGGCAGATACTGTTACGTTCAATGTGATACTTGGGGGCTTGTGCAGAGAAGGTAGATTTGAGGAGGCTCTGGATATGCTTGAGAAACTCCCACACCAGGGGGTGTATTTGAACAAAGGTAGTTACAGGATTGTTCTGAACTCCTTGATCCAAAAATGTGAGTTGAAAAAGGCGAAGGAGTTATTGGGGTTAATGCTAAGTAGGGGGTTTCTGCCCCATTATGCTACCTCAAATGAATTGTTGGTTTGTCTTTGTAAGGCGGGAATGGCTGATGATGCTGCTATGGCACTATTTGACTTGGTGGAGATGGGGTTCCAGCCAGAACTTGAGTCTTGGGAAGTTTTAATTGGGTTAATCTGCAGACACAGGAAGTTGTTGTATGTTTTTGAGCTGCTTGATGAATTAGTGGTCACAAATACTTGA 1524 0.4449 MKFSAIYRSRHSSSQSSSLPWISPLKFAKPAEPKPDPPPEISVEAARKRKYISHDSAIDLIKREKDPQHALKIFNMVSEQKGFQHNNATYATILEKLARCNKFHAVDRVLRQMTYETCKFHEGTFVNLMKHFSKSSLHEKVLHAFFSIQPIVREKPSPKALSTCLNLLLDTNRVDLARKLLLHAKRRLTHKPNVCVFNILVKYHCKNGDLESAFEVVKEMRNSKLSYPNLVTYSTLMDGLCRNGRLKEAFELFEEMVSRDQIVPDPLTYNVLINGFCRGGKPDRARNVIEFMKNNGCYPNVYNYSALVNGLCKVGKLQDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMELLEEMKESECRADTVTFNVILGGLCREGRFEEALDMLEKLPHQGVYLNKGSYRIVLNSLIQKCELKKAKELLGLMLSRGFLPHYATSNELLVCLCKAGMADDAAMALFDLVEMGFQPELESWEVLIGLICRHRKLLYVFELLDELVVTNT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3189 507 Pfam PPR repeat 408 437 IPR002885 -
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Ssu1g3189 507 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Ssu1g3189 507 Pfam PPR repeat 295 328 IPR002885 -
Ssu1g3189 507 Pfam PPR repeat 190 221 IPR002885 -
Ssu1g3189 507 Gene3D Tetratricopeptide repeat domain 22 226 IPR011990 GO:0005515
Ssu1g3189 507 Gene3D Tetratricopeptide repeat domain 328 398 IPR011990 GO:0005515
Ssu1g3189 507 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 15 505 - -
Ssu1g3189 507 Gene3D Tetratricopeptide repeat domain 227 327 IPR011990 GO:0005515
Ssu1g3189 507 Gene3D Tetratricopeptide repeat domain 399 506 IPR011990 GO:0005515
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 408 439 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 304 336 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Ssu1g3189 507 TIGRFAM PPR: pentatricopeptide repeat domain 196 228 IPR002885 -
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Ssu1g3189 507 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 15 505 - -
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu1g3189 507 Pfam PPR repeat family 334 383 IPR002885 -
Ssu1g3189 507 Pfam PPR repeat family 228 278 IPR002885 -
Ssu1g3189 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Ssu1g3189 507 SUPERFAMILY TPR-like 157 395 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3189 193 503 Glycosyltransferase AT1G05670 27.653 3.21e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3189 - - gmx:100790966 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3189 1 83204936 83206459 Ssu1g3189 1 83204936 83206459 ECH