Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3184 ATGGACTCCGTTCCTTTTCGCGACGGCAACATACACTCGATTCTCGACACCCGATATCTTCACTCTCCCCTAGATGTTATTCATAGTTTGCAGACTCATTCCTCGTTGATTCGGAGGCTTACTCAAGAAAGAGAGTTGGAGGGTCACCTTGGCTGTGTCAATGCGGTGGCTTGGAATTCCAAAGGTTCGTTGTTGATATCTGGATCAGATGATACACGGATCAATATTTGGAGCTATTCTGGCCGAAAACTTTTACACTCAATTGACACAGGACATACTGCAAATATATTCTGTACAAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGTCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTTAATTTGTCTCGCTTAAGTGGGAGTGGATTTAGTGACAATGCCATTATTGCTCCATCTGCACTTTACCAATGCCACAGTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTAGTATGGAGTGCTAGTGAAGATGGGACACTAAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCAGCTGGATCTTCGCACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGAGCTAAAAGGTCACTTGCTGATCCTCCTAAACAAGTCCTTGCTTTAAAATCTTGTGATATTAGTTCAACTAGACCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGCTTATATGATAGAAGGATGCTGCCGCCTCTTAGCTCATGTCGGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCGAGCTTGCACTTAACTCATGTTACATTCAGTCCTGATGGACATGAGGTACTCCTCAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATCATGCTGGAGTGAATGAGATGCAATATACTTCAGGAGATGTATCAAAGCTGATGACTTACTCTCCGACAATTAATGGGACAGAGTTGCAGCCTTGTGTGTCTAATGTCTTCCCAAATGGATTTCCTATTAAAAAGAACATTGCTGCAAAGCTTGACAAGTGCaggaaactaataaaatatgctAAGAAATCATTGGACAATGGGACACCCTATTATGGGATTGAGGCATGTAATGAGGTCTTGAATGGCTATGGTCATACTATTGGGCCTGCACTGAAATATGAATGCTTGTGTACTCGTGCTGCACTATTGATTAAGAGAAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGGAAAATTGATAATTCCTCCTATAAAGCACTTTACTACATGTCAGAAGCATTGTCACAGATGGGTAGACATGAAGATGCTTTGGATTTTGCTGTTGCTTCCCATTCATTGGCCCCTTCCAAATCTGAAGTTGCAGAAAGAGTGGAGAATGTGAATAAGGATATTGCTTTAGCTGAAGCTGAAAAAAATAGCAAGACAAATGATGGGGCATCAAGGTTTGATAGTCGGGGTGGAAGAATATTATCATTAAGCGACATACTCTATCGCCCTGAGGCTAATGGTGATGTTCCACAAGATGGTCCGAGATCAGAGAGGGATGATTCTGATTATGACGAGGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGATGAGGGACATGATCTTGAATCAAATATTCTTCATGGAAGCTTAAATCTTAGAATTCATCGGAGAGGTGACTCCAAAGACTATGCTGGTGCAAGTGGCTCATGCGAATCACCTTCATCATCATCACAGAGCAGTAGAACATCTTATCAGCCTGAGCCAGCTGTTGATATGAAACAGAGATTTATTGGCCACTGCAATATTGGGACTGACATAAAACAAGCCAATTTTCTTGGTCAAAGAGgtgaataTGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACTGGTAGACTCTTAAAGATGCTGAATGGTGATGAATCTGTTGTAAATTGTATACAATGCCATccatttgattttgttgttgcAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAGTGCTCCTGTTCCATCTTCTGTAGCTGGTGGTTCGGCAGGACCAGAAACTGGTGATGTGTTGGTTGCTATGGAGAGcaatcaacaaaaattattccGTAGCCGTAACTCTATCTTGCCCTTTGAGCTTTTGGAACCATTTAGAATGCATGAGTTTCCTGAAGGGTCGTTACGCTTACGCCCATTTGAATGCGCTCAAAGCTAA 2295 0.4105 MDSVPFRDGNIHSILDTRYLHSPLDVIHSLQTHSSLIRRLTQERELEGHLGCVNAVAWNSKGSLLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVVSGAGDAEVRLFNLSRLSGSGFSDNAIIAPSALYQCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVNEMQYTSGDVSKLMTYSPTINGTELQPCVSNVFPNGFPIKKNIAAKLDKCRKLIKYAKKSLDNGTPYYGIEACNEVLNGYGHTIGPALKYECLCTRAALLIKRKWKNDAHMAIRDCYAARKIDNSSYKALYYMSEALSQMGRHEDALDFAVASHSLAPSKSEVAERVENVNKDIALAEAEKNSKTNDGASRFDSRGGRILSLSDILYRPEANGDVPQDGPRSERDDSDYDEELELDFETSISGDEGHDLESNILHGSLNLRIHRRGDSKDYAGASGSCESPSSSSQSSRTSYQPEPAVDMKQRFIGHCNIGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLLKMLNGDESVVNCIQCHPFDFVVATSGIDSTIKIWTPSAPVPSSVAGGSAGPETGDVLVAMESNQQKLFRSRNSILPFELLEPFRMHEFPEGSLRLRPFECAQS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3184 764 Gene3D Tetratricopeptide repeat domain 354 488 IPR011990 GO:0005515
Ssu1g3184 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Ssu1g3184 764 Gene3D - 133 331 IPR015943 GO:0005515
Ssu1g3184 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Ssu1g3184 764 SUPERFAMILY WD40 repeat-like 39 695 IPR036322 GO:0005515
Ssu1g3184 764 SMART WD40_4 39 78 IPR001680 GO:0005515
Ssu1g3184 764 SMART WD40_4 657 696 IPR001680 GO:0005515
Ssu1g3184 764 SMART WD40_4 137 177 IPR001680 GO:0005515
Ssu1g3184 764 SMART WD40_4 266 308 IPR001680 GO:0005515
Ssu1g3184 764 SMART WD40_4 611 654 IPR001680 GO:0005515
Ssu1g3184 764 SMART WD40_4 212 245 IPR001680 GO:0005515
Ssu1g3184 764 SMART WD40_4 81 123 IPR001680 GO:0005515
Ssu1g3184 764 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 26 763 - -
Ssu1g3184 764 Gene3D - 25 132 IPR015943 GO:0005515
Ssu1g3184 764 MobiDBLite consensus disorder prediction 523 543 - -
Ssu1g3184 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Ssu1g3184 764 SUPERFAMILY TPR-like 403 477 IPR011990 GO:0005515
Ssu1g3184 764 MobiDBLite consensus disorder prediction 584 609 - -
Ssu1g3184 764 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Ssu1g3184 764 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515
Ssu1g3184 764 Gene3D - 613 749 IPR015943 GO:0005515
Ssu1g3184 764 Coils Coil 474 501 - -
Ssu1g3184 764 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 26 763 IPR045151 -
Ssu1g3184 764 MobiDBLite consensus disorder prediction 589 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3184 Ssu-Chr1 83064830 83076648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3184 638 748 Miscellaneous Gene Families AT5G08390 25.893 7.91e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3184 K11807 - gmx:100793917 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3184 1 83064830 83076648 Ssu1g3184 1 83064830 83076648 ECH