Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3179 ATGAAACAAATCGACGGCGAGGACGACCACCGATCCCCCCGAAACCTCGGCGGGTCGGAGCCCCCCTCCCCGCTCCCGGACCAGGTCCTGGAGAACGTCCTGGAAACGGTGCTCCACTTCCTGACCTCCCGGCGCGACCGCAACGCCGCCTCATTGGTCTGCAAATCCTGGTACCGCGCCGAGGCCCTCACCCGATCCGACCTCTTCATCGGCAACTGCTACGCCGTGTCCCCCCGCCGCGCCACCAACCGGTTCCCCCGCGTCGGGTCCGTGACCATCAAGGGCAAGCCCCGCTTCGCCGACTTCGATCTCATGCCCCCCAACTGGGGGGCCCACTTCACCCCCTGGGCCGCCGCCTTGGCCCAATCCTACCCGTCCCTCCTCCGCAAACTCCACCTCAAACGCATGTCCCTCACCGACCCCGACCTCACCCTCCTCGCCCACTCCTTCCCCTCCTTCCAAGACCTCGTCCTCACCTGCTGCGAAGGCTTCGGCACGCCCGGCCTCGCCGCCGTCACCGCCAAGTGCAGGTTGCTGAGAGTGCTTGATCTCGTGGAATGCGTGGTTGAGGTTGATGAGGGAGTGGATTGGATATCGTGTTTTCCAGAGAGTGAGGCCCAGACCCATTTGCAGTCTCTTGTTTTTGACTGCGTGGAGGGCCCCGTTAATTTCGAGGCTCTGGAGAGGCTGGTGGCGCGGTCACCTTCGTTGACGAAGCTGAGGCTGAATCGCGATGTTTCATTGCCTCAGCTGCACCGTTTGATGCATCGCGCGCCGCATCTGACGCATCTGGGAACTGGATCGTTCAGTGCGTCGGAACTGGATCAGGAATCGGATTTTGCGTCTGCGTTTGCGGCTTGTAAATCGTTGGTTTGTCTGTCTGGGTTCAGGGAGATCTGGGCGGATTATCTTCCTGCTATTTATCCAGTTTGTGCCAATCTCACGTCGTTGAATTTCAGCTATGCTGATATCAGTGCAGATCAGCTCAAATCGGTTGTACGTCACTGTCATAAGCTGCAGACGTTATGGGTTCTTGATTCGATATGTGATGAAGGGCTTCAAGCGGTGGCTGATACTTGCAAGGACTTGCGTGAGCTTCGGGTTTTCCCTGTCAATACCAGGGAGGAGATAGAAGGTCCTGTATCTGAGGTGGGATTCGAGGCGATTTCTCGAGGTTGTAGGAAACTGCagtcaattttgtttttctgcCAGAGAATGACAAATGCGGCTGTGGTGGCTATGTCGAACAACTGCCCGGATCTTGTGGTGTTTCGGTTGTGTATAATTGGGCGGTATCGGCCGGACCCCGAGACGCAAGAACCCATGGACGAGGGTTTTGGTGCCATTGTTATGAACTGCAAGAAGCTCACTCGGCTTGCTGTGTCTGGTTTGCTGACTGATCGGGCTTTTGATTACATTGGGACGTATGGGAAGTTGATCAGGACGCTGTCGGTTGCCTTTGCTGGAGACACTGATCTGGGACTCAAATATGTGCTAGAAGGATGTCCTAATCTGCAGAAGCTTGAAATCAGGGACAGTCCATTTGGTGATGGAGCTTTGCGTTCCGGCCTGCATCATTTCTACAACATGAGGTTCCTCTGGATGTCCTCGTGTAAGTTGACGCGCCAAGCTTGCCAGGAAGTCGCGCGAACGTTGCCCCATCTGGTGTTGGAAGTCATCAATAGTGAAGAGGACAAAACTGATGATATTGAGATTCTGTACATGTATCGGTCTCTGGACAGGCCACGGGATGATGCTCCAAAAGTTGTTACCATTCTTCATTGA 1785 0.5513 MKQIDGEDDHRSPRNLGGSEPPSPLPDQVLENVLETVLHFLTSRRDRNAASLVCKSWYRAEALTRSDLFIGNCYAVSPRRATNRFPRVGSVTIKGKPRFADFDLMPPNWGAHFTPWAAALAQSYPSLLRKLHLKRMSLTDPDLTLLAHSFPSFQDLVLTCCEGFGTPGLAAVTAKCRLLRVLDLVECVVEVDEGVDWISCFPESEAQTHLQSLVFDCVEGPVNFEALERLVARSPSLTKLRLNRDVSLPQLHRLMHRAPHLTHLGTGSFSASELDQESDFASAFAACKSLVCLSGFREIWADYLPAIYPVCANLTSLNFSYADISADQLKSVVRHCHKLQTLWVLDSICDEGLQAVADTCKDLRELRVFPVNTREEIEGPVSEVGFEAISRGCRKLQSILFFCQRMTNAAVVAMSNNCPDLVVFRLCIIGRYRPDPETQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFDYIGTYGKLIRTLSVAFAGDTDLGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHFYNMRFLWMSSCKLTRQACQEVARTLPHLVLEVINSEEDKTDDIEILYMYRSLDRPRDDAPKVVTILH 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3179 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 18 592 - -
Ssu1g3179 594 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g3179 594 Pfam Transport inhibitor response 1 protein domain 86 133 IPR041101 -
Ssu1g3179 594 PANTHER F-BOX PROTEIN FBX14 18 592 - -
Ssu1g3179 594 SUPERFAMILY F-box domain 14 60 IPR036047 GO:0005515
Ssu1g3179 594 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g3179 594 Gene3D - 22 65 - -
Ssu1g3179 594 SUPERFAMILY RNI-like 54 556 - -
Ssu1g3179 594 Pfam F-box 27 66 IPR041567 -
Ssu1g3179 594 Gene3D Ribonuclease Inhibitor 67 593 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3179 Ssu-Chr1 82995505 82997600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3179 - - gmx:100776213 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3179 1 82995505 82997600 Ssu1g3179 1 82995505 82997600 ECH