Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3178 ATGCGTTCATTGGTGGCGAAGGGAAGAAGCATGACATGTCTATGCGTTACCCATTCACTCACTCAAACCCGTAACCCCCCACACGCCACCACCTTCTCTCCTTCTCTCCGTAACCGCAACCCCCTACTCTCCGGTATTCTCCGACCTCGAATTCGGGCATTTTCGACCAACTTCAGGGGCGGCCCCACACCAACTGCTTCTTCTTCTGCGTTGGCCCAAGGCATGGCGAGTTTCAACGCCGACTCTGTCACTTACCTGACGCAGCGAGAAGCCGCTGAGATCGATGAGACATTAATGGGTCCCCTTGGCTTCAGCGTCGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTACTTCCATATCTGAGgTTTACAAACCAAGTGAGTATAGTCATGTTCTTACTATATGTGGTCCTGGTAATAATGGTGGTGACGGTCTGGTGGCTGCCCGGCACCTGCATCACTTTGGTTATAAGCCGTTCGTCTGTTACCCAAAGCGTACCCCCAAGCCTCTCTATGCTGGACTAGTTACTCAGCTTGAAGCACTGTCAATCCCATTCCTGTCAGTGGAAGAACTGCCGTCTGATCTTTCAAACGACTTTGACATTCTCGTAGATGCAATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCTTTTGATGATTTGATCCAGAGACTTGTCtctttacataataataatcaaattggCCAAAAAAGATCAGTTATAATCTCTGTAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTGCAGGCATTAAACCTGATATGTTGgttTCTTTGACTGCCCCAAAATTATGTGCAAAGAAGTTCAGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCTATTGCAGAAAAATATAAGCTTGTACTTCCACCTTATCCTGGAACATCCATGTGTGTTCGAATTGGAAAGCCTCCACAAATTGATATCTCAACTCTAAGAGAGAACTATATCTCTCCAGAATTTCTTGAAGAGCAGGTGGAGGCTGACCCTATTAATCAGTTTCACAAATGGTTTGATGATGCGTTGGCTGCTGGTTTGAAGGAACCAAATGCTATGGCCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTATTGCTAAAAGGCTTAGATAAGGATGGATTTGTGTGGTACACAAACTATGAAAGTCGAAAGGCACGTGAATTATCTGAAAATCCACGTGCATCACTTCTTTTTTACTGGGATGGTTTAAACCGGCAGGTACGGGTGGAAGGGCCTGTTCAGAAAGTCTCTGATGAGGAATCAGAACAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTACTGTAGTGCCTGGTAGGCATGTTCTTTATCAGGAGTACAAAGAGCTGGAACAAAAATATGCTGATGGAAGTTTGATCCCTAAACCTAAGAACTGGGGAGGATATAGGCTAACACCACAACTTTTCGAGTTTTGGCAAGGACAGAAATCTCGCTTGCATGACAGGTTGCAATATACTCCCCATGAGATCAATGGACAGCGGCTGTGGAAGGTTGAGCGGTTGGCTCCCTGa 1623 0.4584 MRSLVAKGRSMTCLCVTHSLTQTRNPPHATTFSPSLRNRNPLLSGILRPRIRAFSTNFRGGPTPTASSSALAQGMASFNADSVTYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSISEVYKPSEYSHVLTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYAGLVTQLEALSIPFLSVEELPSDLSNDFDILVDAMFGFSFHGSPRPPFDDLIQRLVSLHNNNQIGQKRSVIISVDIPSGWHVEEGDVDGAGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPAIAEKYKLVLPPYPGTSMCVRIGKPPQIDISTLRENYISPEFLEEQVEADPINQFHKWFDDALAAGLKEPNAMALSTVGKDGKPSSRMVLLKGLDKDGFVWYTNYESRKARELSENPRASLLFYWDGLNRQVRVEGPVQKVSDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYKELEQKYADGSLIPKPKNWGGYRLTPQLFEFWQGQKSRLHDRLQYTPHEINGQRLWKVERLAP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3178 540 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 506 519 IPR019740 GO:0016638
Ssu1g3178 540 SUPERFAMILY YjeF N-terminal domain-like 84 314 IPR036652 -
Ssu1g3178 540 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 333 540 IPR000659 GO:0004733|GO:0008615|GO:0010181
Ssu1g3178 540 Gene3D - 334 532 IPR012349 -
Ssu1g3178 540 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 88 284 IPR004443 -
Ssu1g3178 540 PANTHER NAD(P)H-HYDRATE EPIMERASE 80 525 IPR032976 -
Ssu1g3178 540 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 323 540 IPR000659 GO:0004733|GO:0008615|GO:0010181
Ssu1g3178 540 ProSiteProfiles YjeF N-terminal domain profile. 91 307 IPR004443 -
Ssu1g3178 540 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 496 540 IPR019576 -
Ssu1g3178 540 Hamap NAD(P)H-hydrate epimerase [nnrE]. 87 322 IPR004443 -
Ssu1g3178 540 Pfam YjeF-related protein N-terminus 107 279 IPR004443 -
Ssu1g3178 540 SUPERFAMILY FMN-binding split barrel 341 540 - -
Ssu1g3178 540 Pfam Pyridoxamine 5'-phosphate oxidase 356 442 IPR011576 -
Ssu1g3178 540 Gene3D - 82 324 IPR036652 -
Ssu1g3178 540 PANTHER NAD(P)H-HYDRATE EPIMERASE 80 525 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3178 K23998 - gmx:100795497 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3178 1 82978466 82987984 Ssu1g3178 1 82978466 82987984 ECH