Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3140 ATGGCGAACCGCTCCCTCTCGGCCGGAATCAGACGGTATGCCCAACCCCTTCTTCTCTCCCCGCTTTCTGATTATAAAGCTAATAAACTCGGCAAATTTCGCTGCATCAGTTTTGTGTTCGGCGCACGAACTCTGTGTAGCTCCGTAGCTTCAGCGTTCCCTGTGCCGTTCGCGCGCAAACTCAAATCCCCAAAGCAGAGTCCATTGCTGGCACTTCAAAATTGGGTGGACCAGGGCAACGAGGTTTCACCCTCCGAGCTCAGACGCATCGCCAGAACCCTCGTCAAATCGAAGCGCTACCACCACGCCCATGAGGTATTTAAATGGATAGAAAACCAGAAGAATTTCCATATGATCCCAGCTGATCATGCTATGAAATTggaattaatcattaaaaattatggtctAATGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCAGCTGCAAAGAAAGCTGCCTGTCTCACGCTTCTACGTGGCTATATAAGAGATAGGGACACTAGTAAAGCTGAGACTTTCATGGTGAAGCTCTATGAACTGGGGCTAGTGGTGAGCCCTCACCCTTTTAATGAGATGATGAAACTATATTTAGCGACGTGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGAAATAAAGTACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTAGTGAGGAAGAAGGATATGGGGTTGCAGCAGTAGAGACAGTTTTTAGAGTAATGCAAAATGACAAGAATGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGCTTATAAGAAAGCAGGACAATCTAAGAAAGCCATTCTGGTTCTCAAAAATGCTGAAAAGAAACTATCTACCTGTAACCGTCTTGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGTAGGAGTGTTGCGGTTATGGGAAGCTAGTAAGGCGGTTGGTGGAAGAATCAGTTGTGCCAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATTGTACAAGCCAAGAGAGTCTTCTTAGAATGGGAATCTAATTGTCAGAAGTACGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGCGGAATGGATTAGTGGAAGAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGTTGTCCAAACTACAAAACGCTGGAAATTCTCATAGAAGGATATGTGAATAGGCAAAAAATGGATGAGGCTATTATTGCCATGAAAAGAGCTTTGGTTATGATGAAAGATTGTCATTGGAGGCTGCCACATGGACTTGTGTTAGCCATTGCAGAGTATTTGGAGAAAGATGGGAATCTTGAATATGCAAACAAGTATATTATAGATATCCATAATTTTGGTCTTGTTAGTTTATCATTGTATAAAATACTGCTTAGAATGCACCTTTCTGCCAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAGTTGAGATGGATAATGAGACACTTTCCATTCTTAAAGCTTTCACTGGGTAG 1557 0.4181 MANRSLSAGIRRYAQPLLLSPLSDYKANKLGKFRCISFVFGARTLCSSVASAFPVPFARKLKSPKQSPLLALQNWVDQGNEVSPSELRRIARTLVKSKRYHHAHEVFKWIENQKNFHMIPADHAMKLELIIKNYGLMEAEEYFMNLPDSAAKKAACLTLLRGYIRDRDTSKAETFMVKLYELGLVVSPHPFNEMMKLYLATCEYRKVPLVIQQMKRNKVPCNVLSYNLWMNACSEEEGYGVAAVETVFRVMQNDKNVEVGWSSLATLANAYKKAGQSKKAILVLKNAEKKLSTCNRLGYFFLITLYASLKEKVGVLRLWEASKAVGGRISCANYICILTCLVKLGDIVQAKRVFLEWESNCQKYDIRVSNVLLGAYVRNGLVEEAESLHLHTLQKGGCPNYKTLEILIEGYVNRQKMDEAIIAMKRALVMMKDCHWRLPHGLVLAIAEYLEKDGNLEYANKYIIDIHNFGLVSLSLYKILLRMHLSANKPPFHILKMMDEDKVEMDNETLSILKAFTG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3140 518 Pfam PPR repeat 370 389 IPR002885 -
Ssu1g3140 518 Gene3D Tetratricopeptide repeat domain 262 461 IPR011990 GO:0005515
Ssu1g3140 518 PANTHER OS02G0796400 PROTEIN 59 516 - -
Ssu1g3140 518 Pfam Pentatricopeptide repeat domain 190 234 IPR002885 -
Ssu1g3140 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Ssu1g3140 518 Gene3D Tetratricopeptide repeat domain 57 242 IPR011990 GO:0005515
Ssu1g3140 518 PANTHER OS12G0527900 PROTEIN 59 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3140 Ssu-Chr1 82271394 82276177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3140 61 457 EF-hand Containing Proteins AT1G02150 31.807 3.25e-71 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3140 - - gsj:114409242 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3140 1 82271394 82276177 Ssu1g3140 1 82271394 82276177 ECH